Browse Element(s) Details


OsAffx.29486.4.S1_at

Description tigr:9636.m03330
TID=OsAffx.29486.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3326010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33210OsAffx.29485.1.S1_at11/118+20569299..20570311expressed protein
LOC_Os08g33220NANA8+20577722..20579730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g33230OsAffx.22722.1.S1_x_at1/118+20580613..20581659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g33240NANA8+20582027..20582401retrotransposon protein, putative, unclassified
LOC_Os08g33250OsAffx.1647.1.S1_at1/118+20583209..20586101retrotransposon protein, putative, unclassified
LOC_Os08g33260OsAffx.29486.4.S1_at10/118+20587563..20589583hypothetical protein
LOC_Os08g33260OsAffx.29486.2.S1_x_at1/118+20587563..20589583hypothetical protein
LOC_Os08g33270OsAffx.29607.3.S1_x_at11/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.5.S1_x_at8/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.1.S1_x_at7/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.2.S1_s_at3/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33280NANA8+20602472..20608388Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os08g33290OsAffx.29487.1.S1_at11/118+20610596..20612662hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29486.4.S1_at--367--8491Chr08:20587610..20587905 (25 bp)
TGGCTACGTGGAATCAGGAGGAACT
LOC_Os08g33260
OsAffx.29486.4.S1_at--220--7611Chr08:20587907..20587931 (25 bp)
GGGCAATTGTTCAAGACGCACCAGG
LOC_Os08g33260
OsAffx.29486.4.S1_at--975--5791Chr08:20587921..20587945 (25 bp)
GACGCACCAGGAGGTTTCATAGCAA
LOC_Os08g33260
OsAffx.29486.4.S1_at--1126--6811Chr08:20587934..20588279 (25 bp)
GTTTCATAGCAAGCGTAGTGGAGAC
LOC_Os08g33260
OsAffx.29486.4.S1_at--799--6311Chr08:20588280..20588304 (25 bp)
GATGCAAGATGGAGGATTCTCGACT
LOC_Os08g33260
OsAffx.29486.4.S1_at--190--7931Chr08:20588293..20588317 (25 bp)
GGATTCTCGACTACAAAATTGGCTG
LOC_Os08g33260
OsAffx.29486.4.S1_at--1022--3171NONE
CAATTTTTCACGAATGTGACCAGGG
NONE
OsAffx.29486.4.S1_at--154--8673Chr08:20589116..20589137 (22 bp)
TGTGACCAGGGAAACCACCCTCAAA
LOC_Os08g33260
OsAffx.29486.4.S1_at--614--4431Chr08:20589285..20589309 (25 bp)
GCCATCTGCCGAGTCCGCGGGTGAA
LOC_Os08g33260
OsAffx.29486.4.S1_at--674--5031Chr08:20589355..20589379 (25 bp)
GCAGTTGCTCGACCTAGATCTGCTC
LOC_Os08g33260
OsAffx.29486.4.S1_at--828--9091Chr08:20589525..20589549 (25 bp)
TGCTCGTCAAGAACTCATCACACGC
LOC_Os08g33260
Target Sequence 
TGGCTACGTGGAATCAGGAGGAACTGGGGCAATTGTTCAAGACGCACCAGGAGGTTTCATAGCAAGCGTAGTGGAGACGA
TGCAAGATGGAGGATTCTCGACTACAAAATTGGCTGCAATTTTTCACGAATGTGACCAGGGAAACCACCCTCAAAACCGC
TGCGCGACGCCGCCCTTTCCCGCCACCAACCCCTCGCCTCCGGAGGACGGAAACCTCGCCCGCGCACATCCCCAGATCCA
TGGCCGTCTGCCCGCCGTGCGCTACCCAGTTCTCCCGCGCCCGCTGTCAGACCACCTGCGCCGCCATCTGCCGAGTCCGC
GGGTGAACGGCGACAGCAACAGCATCAAGCCCGCCCTCGCCGACCACACCGCGCAGTTGCTCGACCTAGATCTGCTCCCC
GGCGCCCATGCACGGAAGCCCCCGGGTGCCTACAGTGAGGCGGCGGCGGCCAAGGCCTACCCGTCCTGCGACGCCATCCC
CTGCGACCAGTTCGAGGTGGCCTTCCAGGCCGTGGAGCTCTGGATCGCCGACCACGCCGTCCTGCTCGTCAAGAACTCAT
CACACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29486.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis