Browse Element(s) Details


OsAffx.29504.1.S1_at

Description tigr:9636.m03435
TID=OsAffx.29504.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3425811/11inhibitor I family protein
LOC_Os08g3424911/11inhibitor I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34240Os.55509.1.S1_at11/118+21333909..21335751Protein kinase domain containing protein, expressed
LOC_Os08g34249OsAffx.29504.1.S1_at11/118+21341722..21342035inhibitor I family protein
LOC_Os08g34258OsAffx.29504.1.S1_at11/118+21354724..21355037inhibitor I family protein
LOC_Os08g34270Os.4658.2.S1_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_x_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_at9/118+21368062..21372300expressed protein
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29504.1.S1_at--333--3932Chr08:21354776..21354800 (25 bp)
CGGCGACGCAGATCGGCAAGGACAG
LOC_Os08g34258
OsAffx.29504.1.S1_at--254--9452Chr08:21354788..21354812 (25 bp)
TCGGCAAGGACAGGCCGGACGTCGC
LOC_Os08g34258
OsAffx.29504.1.S1_at--483--4272Chr08:21354840..21354864 (25 bp)
CCTCACGCCGGATTTCAACGACAAG
LOC_Os08g34258
OsAffx.29504.1.S1_at--185--9692Chr08:21354842..21354866 (25 bp)
TCACGCCGGATTTCAACGACAAGCG
LOC_Os08g34258
OsAffx.29504.1.S1_at--551--4492Chr08:21354846..21354870 (25 bp)
GCCGGATTTCAACGACAAGCGCGTC
LOC_Os08g34258
OsAffx.29504.1.S1_at--877--7932Chr08:21354849..21354873 (25 bp)
GGATTTCAACGACAAGCGCGTCCGT
LOC_Os08g34258
OsAffx.29504.1.S1_at--459--172Chr08:21354851..21354875 (25 bp)
ATTTCAACGACAAGCGCGTCCGTGT
LOC_Os08g34258
OsAffx.29504.1.S1_at--387--10332Chr08:21354852..21354876 (25 bp)
TTTCAACGACAAGCGCGTCCGTGTC
LOC_Os08g34258
OsAffx.29504.1.S1_at--713--2592Chr08:21354856..21354880 (25 bp)
AACGACAAGCGCGTCCGTGTCTTCA
LOC_Os08g34258
OsAffx.29504.1.S1_at--438--2212Chr08:21354860..21354884 (25 bp)
ACAAGCGCGTCCGTGTCTTCATGGA
LOC_Os08g34258
OsAffx.29504.1.S1_at--996--1652Chr08:21354863..21354887 (25 bp)
AGCGCGTCCGTGTCTTCATGGACGA
LOC_Os08g34258
Target Sequence 
CGGCGACGCAGATCGGCAAGGACAGGCCGGACGTCGCCGTCGAGGTGCTCCCGCCGGGCGCGCCCCTCACGCCGGATTTC
AACGACAAGCGCGTCCGTGTCTTCATGGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis