Browse Element(s) Details


Os.4658.2.S1_at

Description gb:AK063317.1
DB_XREF= gi:32973335
TID=Os.4658.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G10, full insert sequence.
FL= gb:AK063317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3427011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34258OsAffx.29504.1.S1_at11/118+21354724..21355037inhibitor I family protein
LOC_Os08g34270Os.4658.2.S1_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_x_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_at9/118+21368062..21372300expressed protein
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4658.2.S1_at--1087--6751Chr08:21368637..21368661 (25 bp)
GTTCAAGCAATAGGTAGCTAGCTCT
LOC_Os08g34270
Os.4658.2.S1_at--446--3631Chr08:21368677..21368701 (25 bp)
CCTCGGTACCGAGCTGAATTACATC
LOC_Os08g34270
Os.4658.2.S1_at--195--5211Chr08:21368692..21368716 (25 bp)
GAATTACATCTTTGCGTCGGAGACT
LOC_Os08g34270
Os.4658.2.S1_at--624--8551Chr08:21368716..21368740 (25 bp)
TGGATGCGGCAGTATTTGTTTCAGA
LOC_Os08g34270
Os.4658.2.S1_at--1008--251Chr08:21368765..21368789 (25 bp)
ATATGCCTCTGCTTTCTAGTACGTT
LOC_Os08g34270
Os.4658.2.S1_at--976--3771Chr08:21368771..21368795 (25 bp)
CTCTGCTTTCTAGTACGTTGGTATG
LOC_Os08g34270
Os.4658.2.S1_at--357--6311Chr08:21368807..21368831 (25 bp)
GATGAGAAAGAACTTGCCTATGACT
LOC_Os08g34270
Os.4658.2.S1_at--191--4451Chr08:21368822..21368846 (25 bp)
GCCTATGACTTTTATCGCAATCAAG
LOC_Os08g34270
Os.4658.2.S1_at--331--7511Chr08:21368855..21368879 (25 bp)
GTGGTAGTGTTTATATCTTTGTTGC
LOC_Os08g34270
Os.4658.2.S1_at--1085--6991Chr08:21368889..21368913 (25 bp)
GTACTGTCCATAATCCTCACTATAA
LOC_Os08g34270
Os.4658.2.S1_at--961--10591Chr08:21368915..21368939 (25 bp)
TTCTGCTGTTTGATGCTTTATTTCA
LOC_Os08g34270
Target Sequence 
GTTCAAGCAATAGGTAGCTAGCTCTGCTGCNGGTTCCGTCCCTCGGTACCGAGCTGAATTACATCTTTGCGTCGGAGACT
GGATGCGGCAGTATTTGTTTCAGATTTGGTGGTGTTAAGATGGAAGGCATATGCCTCTGCTTTCTAGTACGTTGGTATGA
ATTGTGAATGGATGAGAAAGAACTTGCCTATGACTTTTATCGCAATCAAGATCTTGTTGTGGTAGTGTTTATATCTTTGT
TGCANTACATTGGTACTGTCCATAATCCTCACTATAATTTCTGCTGTTTGATGCTTTATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4658.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis