Browse Element(s) Details


Os.52887.1.S1_at

Description gb:AK069725.1
DB_XREF= gi:32979749
TID=Os.52887.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027D10, full insert sequence.
FL= gb:AK069725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3429010/11chorismate mutase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34270Os.4658.2.S1_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_x_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_at9/118+21368062..21372300expressed protein
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009096biological_processaromatic amino acid family biosynthesis, anthranilate pathway
GO:0009607biological_processresponse to biotic stimulus
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004106molecular_functionchorismate mutase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52887.1.S1_at--1121--3871Chr08:21392107..21392131 (25 bp)
CTGTATTCTGCAGCCGCATTAGTTA
LOC_Os08g34290
Os.52887.1.S1_at--957--6871Chr08:21392157..21392181 (25 bp)
GTATTTCAATGAGTTGCTCCCTCTC
LOC_Os08g34290
Os.52887.1.S1_at--880--8231Chr08:21392203..21392227 (25 bp)
GGCAACTATGCTGCAACTGTTTCAT
LOC_Os08g34290
Os.52887.1.S1_at--234--8771Chr08:21392235..21392347 (25 bp)
TGTATGTCTGCAGGCACTCTCAAGA
LOC_Os08g34290
Os.52887.1.S1_at--555--10551Chr08:21392384..21392408 (25 bp)
TTCATAGGCGACCAGCAGAACTACA
LOC_Os08g34290
Os.52887.1.S1_at--24--1931Chr08:21392558..21392582 (25 bp)
ACGGATGCCCTGATGAAATTGTTGA
LOC_Os08g34290
Os.52887.1.S1_at--8--2251Chr08:21392573..21392597 (25 bp)
AAATTGTTGACATCTGAAGCCCAGG
LOC_Os08g34290
Os.52887.1.S1_at--221--5291Chr08:21392626..21392650 (25 bp)
GAAGGCCATGGTGTTCGGTCAAAAT
LOC_Os08g34290
Os.52887.1.S1_at--1049--1091Chr08:21392770..21392794 (25 bp)
AGTGGAGGTCGAGTACCTGCTCCAT
LOC_Os08g34290
Os.52887.1.S1_at--783--1751Chr08:21392784..21392808 (25 bp)
ACCTGCTCCATCGTCTTGATTGAAT
LOC_Os08g34290
Os.52887.1.S1_at--1104--5171NONE
GCAAGGTCTGCAGATTGTTCAGTCC
NONE
Target Sequence 
CTGTATTCTGCAGCCGCATTAGTTAATGTGAATGATGCCATATGGAGCATGTATTTCAATGAGTTGCTCCCTCTCCTGGC
CAAGAATGGCAATGATGGCAACTATGCTGCAACTGTTTCATCAGATCTTGTATGTCTGCAGGCACTCTCAAGAAGGATCA
ACTATGGGAGGTATGTGGCAGAAGTGAAGTTCATAGGCGACCAGCAGAACTACACAACTTTAATTCGTAACAAGGACACG
GATGCCCTGATGAAATTGTTGACATCTGAAGCCCAGGAAGATGTGGTGAAGAGAAGGGTTCAGAAGAAGGCCATGGTGTT
CGGTCAAAATGTGACATTGGATGGACCAGTTGAAACTGGCAACAGCAACAGTAGCCAAACAAGTTTCAAAGTTGATCCTT
CATTAGTGTATAAACTGTATGACAAATGGGTGATTCCATTGACTAAACAAGTGGAGGTCGAGTACCTGCTCCATCGTCTT
GATTGAATCAAGCATTTATCTAGCTAACCTATTTGTTCAAAGTGTAACTAAGTTGTCACATGAAAGATTGAAATGATACA
CCAATAATAACATGCAGCAAGGTCTGCAGATTGTTCAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis