Browse Element(s) Details


OsAffx.29505.1.S1_at

Description tigr:9636.m03443
TID=OsAffx.29505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3432010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29505.1.S1_at--421--2831Chr08:21406497..21406521 (25 bp)
AAGTATCGTGCAGCTGCGGGATTCT
LOC_Os08g34320
OsAffx.29505.1.S1_at--510--1591Chr08:21406486..21406510 (25 bp)
AGCTGCGGGATTCTGTTACAGTCAG
LOC_Os08g34320
OsAffx.29505.1.S1_at--106--6591Chr08:21405998..21406022 (25 bp)
GATTGCTTATCTTCAACATTGGCCG
LOC_Os08g34320
OsAffx.29505.1.S1_at--758--1551Chr08:21405929..21405953 (25 bp)
AGCTTTACAAGCATGCACACTTCGC
LOC_Os08g34320
OsAffx.29505.1.S1_at--1106--2691Chr08:21405719..21405743 (25 bp)
AAGCTCAGCGGTTGATGTTATGCAA
LOC_Os08g34320
OsAffx.29505.1.S1_at--719--6791Chr08:21405703..21405727 (25 bp)
GTTATGCAAGCTTTGAGTTCCTCAA
LOC_Os08g34320
OsAffx.29505.1.S1_at--585--9231Chr08:21405685..21405709 (25 bp)
TCCTCAATTTTGTACCTCCTATCAA
LOC_Os08g34320
OsAffx.29505.1.S1_at--203--6931Chr08:21405450..21405474 (25 bp)
GTAGGACGTCTTTGGTTTCTGAACT
LOC_Os08g34320
OsAffx.29505.1.S1_at--664--5471Chr08:21405430..21405454 (25 bp)
GAACTTTCAGACATGGCAAGGCAAG
LOC_Os08g34320
OsAffx.29505.1.S1_at--1143--991NONE
AGGTTGCCCTTGGTACAGGAGTCCA
NONE
OsAffx.29505.1.S1_at--411--4891Chr08:21404347..21404371 (25 bp)
GCTTTCAATATGTACAGGCACGGTG
LOC_Os08g34320
Target Sequence 
AAGTATCGTGCAGCTGCGGGATTCTGTTACAGTCAGAAGAATTGATGTTCAACTCCTGCAACAAGAGCTCAAACTGTACT
ACGTTTTAAAAGAGCAGATTGCTTATCTTCAACATTGGCCGAAACTAGAAGGAGAGAACGGTAGTACTTTGATTGGGGCT
ATTGAAGCTTTACAAGCATGCACACTTCGCCTTCCAGTTACATCAGGAGCACAGGCAGATGCTGTTGCAGTTAAGAATTC
TATAAGCTCAGCGGTTGATGTTATGCAAGCTTTGAGTTCCTCAATTTTGTACCTCCTATCAAAGGTTGAAGGTAGGACGT
CTTTGGTTTCTGAACTTTCAGACATGGCAAGGCAAGAAAAGGTTGCCCTTGGTACAGGAGTCCAGCCTCCGTACTCATCT
GATGCAACTGAAGGAAGGAGTTTTAGGATGACTTTGATAATCCAAGTTGAAGAAACCAGTCATGCTTTCAATATGTACAG
GCACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis