Browse Element(s) Details


Os.56242.1.S1_x_at

Description gb:AK109682.1
DB_XREF= gi:32994891
TID=Os.56242.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D06, full insert sequence.
FL= gb:AK109682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3432011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56242.1.S1_x_at--464--4811Chr08:21407271..21407295 (25 bp)
GCTCTGCCGTCTTAACTTCGAGAAG
LOC_Os08g34320
Os.56242.1.S1_x_at--657--7751Chr08:21407242..21407266 (25 bp)
GGTGTTGCCAACACGCCTATCAGGT
LOC_Os08g34320
Os.56242.1.S1_x_at--778--10131Chr08:21407225..21407249 (25 bp)
TATCAGGTCAGTCACTCCATCAAAC
LOC_Os08g34320
Os.56242.1.S1_x_at--1014--8011Chr08:21407178..21407202 (25 bp)
GGAGGATTTGTCCAGCTGAAGTCAA
LOC_Os08g34320
Os.56242.1.S1_x_at--349--2411Chr08:21407040..21407064 (25 bp)
AAAACTCTAAAGCTGCTACTCGCCC
LOC_Os08g34320
Os.56242.1.S1_x_at--678--5931Chr08:21407015..21407039 (25 bp)
GAGCAGGACTCTGTCTTCACCTGTT
LOC_Os08g34320
Os.56242.1.S1_x_at--395--2411Chr08:21406970..21406994 (25 bp)
AAACAAGGTCTTGTCAGCTGCATCC
LOC_Os08g34320
Os.56242.1.S1_x_at--655--1011Chr08:21406924..21406948 (25 bp)
AGTCCTTTGAGGACAAGGCCTTCGG
LOC_Os08g34320
Os.56242.1.S1_x_at--37--1751Chr08:21406898..21406922 (25 bp)
ACCTTGCCGATCACGATGTTGTTCA
LOC_Os08g34320
Os.56242.1.S1_x_at--262--4631Chr08:21406860..21406884 (25 bp)
GCGTTGCACCTCTTGTGTTTAACTA
LOC_Os08g34320
Os.56242.1.S1_x_at--25--5231Chr08:21406790..21406814 (25 bp)
GAATATTCACCAATTACGTCTGCTG
LOC_Os08g34320
Target Sequence 
GCTCTGCCGTCTTAACTTCGAGAAGCAATGGTGTTGCCAACACGCCTATCAGGTCAGTCACTCCATCAAACCCTACAAGG
GGGCTTTCACCAAGGAGGATTTGTCCAGCTGAAGTCAAAGCCAATGGTCTGAATCAGCCATTGAACGGATTGGCAAAGAG
ATTGGCTACACATGAGAGCAGAAGAGAGGATAAGACAGAATCTGGTAGTGATGTTTCTTCACAGACATCAGAAAACTCTA
AAGCTGCTACTCGCCCGAGCAGGACTCTGTCTTCACCTGTTCTACATCGCTCGTCGTCACCAAACAAGGTCTTGTCAGCT
GCATCCCCTGCTTCTACAGCCTTTCAAAGTCCTTTGAGGACAAGGCCTTCGGCACCTTGCCGATCACGATGTTGTTCAAC
AAGTCAATCAGGCGTTGCACCTCTTGTGTTTAACTATATAGTTGATGCGAGGAAAGGGAAGAAGAGTGCAAGCCAGTTTG
AGAATATTCACCAATTACGTCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56242.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis