Browse Element(s) Details


Os.52397.1.S1_at

Description gb:AK073494.1
DB_XREF= gi:32983517
TID=Os.52397.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044F17, full insert sequence.
FL= gb:AK066840.1 gb:AK073494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3433010/11Strictosidine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52397.1.S1_at--20--1191Chr08:21417454..21417478 (25 bp)
AGTACGACGCGAAGACGAAGCAGGT
LOC_Os08g34330
Os.52397.1.S1_at--684--8971Chr08:21417421..21417445 (25 bp)
TGAAGGACCGGTTGCCGTACGCCAA
LOC_Os08g34330
Os.52397.1.S1_at--297--3311Chr08:21417340..21417364 (25 bp)
CACAGGTGTTCAGGTATTGGCTCAA
LOC_Os08g34330
Os.52397.1.S1_at--425--5191Chr08:21417210..21417234 (25 bp)
GAAGATTACGTTCAACGTGCCGGCG
LOC_Os08g34330
Os.52397.1.S1_at--711--8091Chr08:21417072..21417096 (25 bp)
GGACCGCAAGTTGTGGCTCGGCTCC
LOC_Os08g34330
Os.52397.1.S1_at--1133--7191Chr08:21417047..21417071 (25 bp)
GTCGATCTCGACTACGTCGGCCTAC
LOC_Os08g34330
Os.52397.1.S1_at--785--5331Chr08:21417011..21417035 (25 bp)
GAAGTTATCTGTTTAGTGGTGTTAG
LOC_Os08g34330
Os.52397.1.S1_at--688--5231Chr08:21416949..21416973 (25 bp)
GAATCAGGATTGGTACAACTCTTTT
LOC_Os08g34330
Os.52397.1.S1_at--1016--7031Chr08:21416937..21416961 (25 bp)
GTACAACTCTTTTTTGCTGGCAGCT
LOC_Os08g34330
Os.52397.1.S1_at--814--4711Chr08:21416922..21416946 (25 bp)
GCTGGCAGCTATATTAATTAGACGT
LOC_Os08g34330
Os.52397.1.S1_at--627--7471Chr08:21416879..21416903 (25 bp)
GTGTGTGCTTGATATACACACCTTG
NONE
Target Sequence 
AGTACGACGCGAAGACGAAGCAGGTGACGGTGCTGAAGGACCGGTTGCCGTACGCCAACGGCGTGGCCGTCAGCCACGAC
GGGAGGTACCTCGTGGTGGCGCACACGGGGCCGGCACAGGTGTTCAGGTATTGGCTCAAGGGGGCCAAGGCCGGCCAGTA
CGAGCTCTTCGCCGACCTGCCCGGGTACCCCGACAACGTCCGGCGAGACGCCAAGGGGGGCTACTGGGTGGGGCTCAACC
GGGAGAAGATTACGTTCAACGTGCCGGCGGCGGCTTCTCCGGCCAAGCACCTGGTCGGCGTCCGGCTCAACGGCGACGGC
GTCGAGGTGGAGGAGCTGACGGCTGCTAGTAGGGCTGTGACGCTGAGCGAGGTTGTGGAGAGGGACCGCAAGTTGTGGCT
CGGCTCCGTCGATCTCGACTACGTCGGCCTACTGCAGTAGAANGAAGTTATCTGTTTAGTGGTGTTAGGAATAATAAAGG
CAGGCTAATTAGGTATTTAGCAGTAGAATCAGGATTGGTACAACTCTTTTTTGCTGGCAGCTATATTAATTAGACGTTTT
AGTNGTCTTTTTTCAGTGTGTGCTTGATATACACACCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis