Browse Element(s) Details


OsAffx.17326.1.S1_at

Description tigr:9636.m03448
TID=OsAffx.17326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3437010/11SET domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein
LOC_Os08g34380Os.49821.1.S1_x_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34380Os.49821.2.S1_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34390Os.56875.1.S1_at11/118+21458160..21459197transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g34400Os.53177.1.S1_s_at1/118+21466073..21470054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17326.1.S1_at--31--10831Chr08:21440133..21440157 (25 bp)
TTGGACAATGGGACAGAACCACCTC
LOC_Os08g34370
OsAffx.17326.1.S1_at--109--5631Chr08:21440144..21440577 (25 bp)
GACAGAACCACCTCCATATAAAATT
LOC_Os08g34370
OsAffx.17326.1.S1_at--45--3151Chr08:21440583..21440607 (25 bp)
AATTCCTACAGGTCTCTATTGGTTA
LOC_Os08g34370
OsAffx.17326.1.S1_at--679--1031Chr08:21440592..21440616 (25 bp)
AGGTCTCTATTGGTTAGCTGCTCTC
LOC_Os08g34370
OsAffx.17326.1.S1_at--1141--8571Chr08:21440602..21440626 (25 bp)
TGGTTAGCTGCTCTCGGGCTTGTCA
LOC_Os08g34370
OsAffx.17326.1.S1_at--520--3991Chr08:21440616..21440640 (25 bp)
CGGGCTTGTCACTGCTCAGATGAGT
LOC_Os08g34370
OsAffx.17326.1.S1_at--633--6091Chr08:21440637..21440661 (25 bp)
GAGTGCACTAACAAACCATTTCGCC
LOC_Os08g34370
OsAffx.17326.1.S1_at--516--1991Chr08:21440643..21440667 (25 bp)
ACTAACAAACCATTTCGCCGACAGA
LOC_Os08g34370
OsAffx.17326.1.S1_at--975--6591Chr08:21440672..21440908 (25 bp)
GATTGAGATCGTTAAGTGGAATACT
LOC_Os08g34370
OsAffx.17326.1.S1_at--135--7531Chr08:21440899..21440923 (25 bp)
GTGGAATACTTCTGCAGACACAATA
LOC_Os08g34370
OsAffx.17326.1.S1_at--603--1851NONE
ACGACTACAGATTCGAGCAACATTA
NONE
Target Sequence 
TTGGACAATGGGACAGAACCACCTCCATATAAAATTAAGATAATTCCTACAGGTCTCTATTGGTTAGCTGCTCTCGGGCT
TGTCACTGCTCAGATGAGTGCACTAACAAACCATTTCGCCGACAGAAAAAGATTGAGATCGTTAAGTGGAATACTTCTGC
AGACACAATATTGTGGATGGGGATCTAGAGCACTGGAAGCCATTGAGAAAGATGATTTTGTCATAGAATTTGTTGGAGAA
GTTATTGATGATGAGACTTGTGAAGAAAGGCTTGAGGACATGAGAAGGCGTGGAGATAAGAATTTCTACATGTGTAAAGT
CAAAAAGGACTTTGTAATTGATGCAACATTCAAAGGAAATGATTGCCGCTTTTTTAACCACAGTTGTGAACCTAATTGCC
AGTTACAGAAATGGCAAGTCAATGGCAAGACAAGGCTAGGTGTGTTTGCTTCAAAAGCTATAGAAGTGGGGGAACCCTTG
ACCTACGACTACAGATTCGAGCAACATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis