Browse Element(s) Details


Os.49821.2.S1_at

Description gb:AK111984.1
DB_XREF= gi:37988647
TID=Os.49821.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F05, full insert sequence.
FL= gb:AK111984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3438011/11leucine-rich repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein
LOC_Os08g34380Os.49821.1.S1_x_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34380Os.49821.2.S1_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34390Os.56875.1.S1_at11/118+21458160..21459197transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g34400Os.53177.1.S1_s_at1/118+21466073..21470054hypothetical protein
LOC_Os08g34410OsAffx.29506.1.S1_x_at11/118+21470969..21471736hypothetical protein
LOC_Os08g34420OsAffx.26000.1.S1_at2/118+21472829..21477232retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49821.2.S1_at--649--6651Chr08:21445301..21445325 (25 bp)
GTTGATAGAGCCTTGAGAGAGACAT
LOC_Os08g34380
Os.49821.2.S1_at--1029--1371Chr08:21445295..21445319 (25 bp)
AGAGCCTTGAGAGAGACATGGAGTC
LOC_Os08g34380
Os.49821.2.S1_at--580--1411Chr08:21445282..21445306 (25 bp)
AGACATGGAGTCATTTTGACTGCTT
LOC_Os08g34380
Os.49821.2.S1_at--1160--3571Chr08:21445271..21445295 (25 bp)
CATTTTGACTGCTTTGTGACCTGTA
LOC_Os08g34380
Os.49821.2.S1_at--849--10391Chr08:21445269..21445293 (25 bp)
TTTTGACTGCTTTGTGACCTGTAAA
LOC_Os08g34380
Os.49821.2.S1_at--106--5731Chr08:21445265..21445289 (25 bp)
GACTGCTTTGTGACCTGTAAAGATA
LOC_Os08g34380
Os.49821.2.S1_at--207--5831Chr08:21445254..21445278 (25 bp)
GACCTGTAAAGATAATCACTCCATT
LOC_Os08g34380
Os.49821.2.S1_at--821--2791Chr08:21445246..21445270 (25 bp)
AAGATAATCACTCCATTTCTTTTTG
LOC_Os08g34380
Os.49821.2.S1_at--377--8691Chr08:21445219..21445243 (25 bp)
TGTGCAACAGTAAATGATCGAATCT
LOC_Os08g34380
Os.49821.2.S1_at--339--6391Chr08:21445204..21445228 (25 bp)
GATCGAATCTGATAGTGGGAATGTT
LOC_Os08g34380
Os.49821.2.S1_at--423--7611Chr08:21445188..21445212 (25 bp)
GGGAATGTTGGATGCATTGTTCTCA
LOC_Os08g34380
Target Sequence 
GTTGATAGAGCCTTGAGAGAGACATGGAGTCATTTTGACTGCTTTGTGACCTGTAAAGATAATCACTCCATTTCTTTTTG
TATGTGCAACAGTAAATGATCGAATCTGATAGTGGGAATGTTGGATGCATTGTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49821.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis