Browse Element(s) Details


Os.20018.1.S1_a_at

Description gb:AK102411.1
DB_XREF= gi:32987620
TID=Os.20018.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092P05, full insert sequence.
FL= gb:AK059843.1 gb:AK102411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g343409/11EF hand family protein, expressed
LOC_Os10g337701/11Importin-beta N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed
LOC_Os08g34350Os.20018.2.S1_x_at2/118+21423656..21425276expressed protein
LOC_Os08g34360Os.54786.1.S1_at11/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34360OsAffx.19494.1.S1_at1/118+21431251..21435646AP2 domain containing protein, expressed
LOC_Os08g34370OsAffx.17326.1.S1_at10/118+21436098..21444531SET domain containing protein
LOC_Os08g34370Os.49478.1.S1_at1/118+21436098..21444531SET domain containing protein
LOC_Os08g34380Os.49821.1.S1_x_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed
LOC_Os08g34380Os.49821.2.S1_at11/118+21445186..21450770leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20018.1.S1_a_at--470--6051Chr08:21419908..21419932 (25 bp)
GAGTTCGTGGCGTTCTTATCGGCGT
LOC_Os08g34340
Os.20018.1.S1_a_at--219--7551Chr08:21419914..21419938 (25 bp)
GTGGCGTTCTTATCGGCGTTTAGTC
LOC_Os08g34340
Os.20018.1.S1_a_at--474--10411Chr08:21419923..21419947 (25 bp)
TTATCGGCGTTTAGTCCCCGCGCAA
LOC_Os08g34340
Os.20018.1.S1_a_at--851--5031NONE
GCAGAGGCAGAAAGTTTTGATCCAT
NONE
Os.20018.1.S1_a_at--216--5572Chr08:21420700..21420724 (25 bp)
GAAAGTTTTGATCCATGTTTTAGAA
LOC_Os08g34340
Os.20018.1.S1_a_at--204--10471NONE
TTACTCTGCCAGACTTTATGAAGAT
NONE
Os.20018.1.S1_a_at--454--5352Chr10:17532983..17533002 (20 bp)
GAAGATTCTTGACAATTCTGATGTG
LOC_Os10g33770
Os.20018.1.S1_a_at--1099--3171Chr08:21421232..21421256 (25 bp)
CAATTCTGATGTGAAGATGGAGGTT
LOC_Os08g34340
Os.20018.1.S1_a_at--752--1891Chr08:21421508..21421532 (25 bp)
ACGTCTGTGATATTATGGCTTATTA
LOC_Os08g34340
Os.20018.1.S1_a_at--564--851Chr08:21421522..21421546 (25 bp)
ATGGCTTATTAATCCTTTCTAGTAC
LOC_Os08g34340
Os.20018.1.S1_a_at--844--9511Chr08:21421528..21421552 (25 bp)
TATTAATCCTTTCTAGTACCTTCCA
LOC_Os08g34340
Target Sequence 
GAGTTCGTGGCGTTCTTATCGGCGTTTAGTCCCCGCGCAAGCCTGCAGCANAAAAATTGAATTTATTTTCAGGGTTTATG
ACACNGACTGCAATGGGAAGGTGGCATTTGATGATATCTTGAGCATCTTGCGGGATCTGNCTGGTTCTTTTATGACTGAG
CAGCAGAGGCAGAAAGTTTTGATCCATGTTTTAGAAGAAGCTGGCTATACNAAAGATTCAAANTTTACTCTGCCAGACTT
TATGAAGATTCTTGACAATTCTGATGTGAAGATGGAGGTTGAAGTTCCNATTGACTAAGTACTTGTGTCATTGTTCTGTG
CCCCGGCATGTATGTCAGCTTGAGAAGATGGATTAATTAGACCCTACTAGTACTTTTTNNNNTTATCATGTATTAAGCTG
TAATTAGTGAAACATCTGTATTTGATCATTTTCAGGCTTAATTAACTTTTACCACCCGTGCATCCTATGACCTTTCAGGT
ACTGTTACCCTGTAAGGTCCCCTTCATTTTTTCCTAACATCTTTTCATATTGAAAACGTCTGTGATATTATGGCTTATTA
ATCCTTTCTAGTACCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20018.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis