Browse Element(s) Details


Os.51887.1.S1_at

Description gb:AK064195.1
DB_XREF= gi:32974213
TID=Os.51887.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D04, full insert sequence.
FL= gb:AK064195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g343008/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34270Os.4658.2.S1_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_x_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_at9/118+21368062..21372300expressed protein
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34310NANA8+21398496..21402395hypothetical protein
LOC_Os08g34320Os.56242.1.S1_x_at11/118+21404146..21410273expressed protein
LOC_Os08g34320OsAffx.29505.1.S1_at10/118+21404146..21410273expressed protein
LOC_Os08g34330Os.52397.1.S1_at10/118+21416879..21418484Strictosidine synthase family protein, expressed
LOC_Os08g34340Os.20018.1.S1_a_at9/118+21419062..21421561EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51887.1.S1_at--478--3091Chr08:21395410..21395434 (25 bp)
AATAAACTTATCCTCTGACTTGCAT
LOC_Os08g34300
Os.51887.1.S1_at--797--9811Chr08:21395412..21395436 (25 bp)
TAAACTTATCCTCTGACTTGCATGT
LOC_Os08g34300
Os.51887.1.S1_at--135--2531Chr08:21395414..21395438 (25 bp)
AACTTATCCTCTGACTTGCATGTTC
LOC_Os08g34300
Os.51887.1.S1_at--933--10411Chr08:21395417..21395441 (25 bp)
TTATCCTCTGACTTGCATGTTCCTT
LOC_Os08g34300
Os.51887.1.S1_at--1134--9251Chr08:21395420..21395444 (25 bp)
TCCTCTGACTTGCATGTTCCTTCCT
LOC_Os08g34300
Os.51887.1.S1_at--85--9531NONE
TCTCAGTTAGCCCAGCTATTGACCA
NONE
Os.51887.1.S1_at--923--10451NONE
TTAGCCCAGCTATTGACCAACTCAA
NONE
Os.51887.1.S1_at--555--4551NONE
GCCCAGCTATTGACCAACTCAAGTG
NONE
Os.51887.1.S1_at--727--691Chr08:21395508..21395532 (25 bp)
ATGAGAACTCTCATCTGTTCCAGGA
LOC_Os08g34300
Os.51887.1.S1_at--441--1431Chr08:21395511..21395535 (25 bp)
AGAACTCTCATCTGTTCCAGGAGAA
LOC_Os08g34300
Os.51887.1.S1_at--1085--6631Chr08:21395695..21395719 (25 bp)
GTTGTATCTAGATCTCTTTAGTAAA
LOC_Os08g34300
Target Sequence 
AATAAACTTATCCTCTGACTTGCATGTTCCTTCCTTTCCAGTAAACCTTCTCTCAGTTAGCCCAGCTATTGACCAACTCA
AGTGCATTGTTGTATTTGATGAGAACTCTCATCTGTTCCAGGAGAAGGGGACTGGGAGGAGGATTGGGACTAGAGTCAGG
TGTGATGGGTTGTGGTACATCAATCATGAGGAACTGGGGCTAGCTGCGGTGGTTGGAAATGTTGAGAAGGAGATCAGTTT
GCTTCATTGTCAGTTAGGACATCCATCTTTTGAGAGTTTGAGTAAGTTGTATCTAGATCTCTTTAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis