Browse Element(s) Details


OsAffx.29506.1.S1_x_at

Description tigr:9636.m03452
TID=OsAffx.29506.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3443011/11hypothetical protein
LOC_Os08g3441011/11hypothetical protein
LOC_Os08g344903/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34390Os.56875.1.S1_at11/118+21458160..21459197transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g34400Os.53177.1.S1_s_at1/118+21466073..21470054hypothetical protein
LOC_Os08g34410OsAffx.29506.1.S1_x_at11/118+21470969..21471736hypothetical protein
LOC_Os08g34420OsAffx.26000.1.S1_at2/118+21472829..21477232retrotransposon protein, putative, unclassified
LOC_Os08g34430OsAffx.29506.1.S1_x_at11/118+21479244..21479987hypothetical protein
LOC_Os08g34440OsAffx.19542.3.S1_x_at5/118+21486600..21490508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34450OsAffx.29506.2.S1_at11/118+21491884..21492597hypothetical protein
LOC_Os08g34460Os.56957.1.S1_at11/118+21494202..21495262senescence-associated protein DH, putative, expressed
LOC_Os08g34470OsAffx.29507.1.S1_at11/118+21498120..21499066hypothetical protein
LOC_Os08g34480Os.53649.1.S1_at10/118+21499282..21503457Splicing factor 3B subunit 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29506.1.S1_x_at--483--4232Chr08:21479698..21479722 (25 bp)
CCGACGCTTGCGAACGCTGGGACGC
LOC_Os08g34430
OsAffx.29506.1.S1_x_at--260--9153Chr08:21505558..21505582 (25 bp)
TGCGAACGCTGGGACGCGCACAAGA
LOC_Os08g34490
OsAffx.29506.1.S1_x_at--333--9292Chr08:21479507..21479531 (25 bp)
TCCGTCGAGCGCTGGGACAGCAGCA
LOC_Os08g34430
OsAffx.29506.1.S1_x_at--312--8653Chr08:21505372..21505675 (25 bp)
TGGGACAGCAGCAAGCGGCCGCTGA
LOC_Os08g34490
OsAffx.29506.1.S1_x_at--585--7614Chr08:21508852..21508876 (25 bp)
GGGAAGAGCAACTCCACAAGCCGCA
LOC_Os08g34490
OsAffx.29506.1.S1_x_at--650--3814Chr08:21508863..21508887 (25 bp)
CTCCACAAGCCGCACGATGAAGACG
NONE
OsAffx.29506.1.S1_x_at--91--9213Chr08:21508864..21508888 (25 bp)
TCCACAAGCCGCACGATGAAGACGA
NONE
OsAffx.29506.1.S1_x_at--503--4373Chr08:21508865..21508889 (25 bp)
CCACAAGCCGCACGATGAAGACGAC
NONE
OsAffx.29506.1.S1_x_at--940--1853Chr08:21508888..21508912 (25 bp)
ACGACGAGTGCGCAGATGATCAGCA
NONE
OsAffx.29506.1.S1_x_at--739--4093Chr08:21508889..21508913 (25 bp)
CGACGAGTGCGCAGATGATCAGCAA
NONE
OsAffx.29506.1.S1_x_at--858--5773Chr08:21508890..21508914 (25 bp)
GACGAGTGCGCAGATGATCAGCAAG
NONE
Target Sequence 
CCGACGCTTGCGAACGCTGGGACGCGNACAAGAACAAGAAAGCNGGCGGCTCGGCAGCNTCGTCGTCGACGTCGNNNAGN
GCCAGCGGCGGNANCCCNGGNCGCGCCGACTCNTGCGAACGCTGGGACGCGCACAAGACACCNGGCAGCCCTGCGTCGTC
GACCGGCAGCANCGGGAGCNCCTGCCGCNCNGACTCCGTCGAGCGCTGGGACAGCAGCAAGCGGCCGCTGAGCCGCGCGT
CGTCGNNNGCCGAGCGCTGGGACATCAACAAGAAGCCTCGCCCNNNNNNNNNNNNCGCTNTCNGCAGCGGGAAGAGCAAC
TCCACAAGCCGCACGATGAAGACGACGACGAGTGCGCAGATGATCAGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29506.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis