Browse Element(s) Details


OsAffx.29507.1.S1_at

Description tigr:9636.m03458
TID=OsAffx.29507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34420OsAffx.26000.1.S1_at2/118+21472829..21477232retrotransposon protein, putative, unclassified
LOC_Os08g34430OsAffx.29506.1.S1_x_at11/118+21479244..21479987hypothetical protein
LOC_Os08g34440OsAffx.19542.3.S1_x_at5/118+21486600..21490508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34450OsAffx.29506.2.S1_at11/118+21491884..21492597hypothetical protein
LOC_Os08g34460Os.56957.1.S1_at11/118+21494202..21495262senescence-associated protein DH, putative, expressed
LOC_Os08g34470OsAffx.29507.1.S1_at11/118+21498120..21499066hypothetical protein
LOC_Os08g34480Os.53649.1.S1_at10/118+21499282..21503457Splicing factor 3B subunit 5, putative, expressed
LOC_Os08g34490OsAffx.19542.3.S1_x_at7/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.1.S1_x_at3/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.9949.1.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.2.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34500OsAffx.29508.1.S1_at1/118+21510757..21513825expressed protein
LOC_Os08g34510OsAffx.17329.1.S1_s_at11/118+21520515..21521304expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29507.1.S1_at--1107--10551Chr08:21498888..21498912 (25 bp)
TTCTTCCCCTGCACGCAGACGAAGA
LOC_Os08g34470
OsAffx.29507.1.S1_at--858--4111Chr08:21498875..21498899 (25 bp)
CGCAGACGAAGAACTTCTACCGCTG
LOC_Os08g34470
OsAffx.29507.1.S1_at--508--1711Chr08:21498841..21498865 (25 bp)
ACCACTGGCGCCATTGGAGCGAACA
LOC_Os08g34470
OsAffx.29507.1.S1_at--76--4331Chr08:21498831..21498855 (25 bp)
CCATTGGAGCGAACAACGGCAAGGC
LOC_Os08g34470
OsAffx.29507.1.S1_at--578--1131Chr08:21498555..21498579 (25 bp)
AGTGCGGCAGCAGTAGCGTGGGCGT
LOC_Os08g34470
OsAffx.29507.1.S1_at--1088--8111Chr08:21498505..21498529 (25 bp)
GGACTGGAAGTGAGCCGCGAGGCCG
LOC_Os08g34470
OsAffx.29507.1.S1_at--1095--9191Chr08:21498478..21498502 (25 bp)
TGCCATCACCAACGTACGAGGTGGG
LOC_Os08g34470
OsAffx.29507.1.S1_at--821--836Chr11:23432457..23432818 (25 bp)
ATGGATCCAATTAACTCTTCTTAGT
NONE
OsAffx.29507.1.S1_at--423--1171Chr08:21498170..21498194 (25 bp)
AGTAATTCGTATATGGCTGTGCCAA
LOC_Os08g34470
OsAffx.29507.1.S1_at--437--4711Chr08:21498155..21498179 (25 bp)
GCTGTGCCAAAACGAAAGTGCCAAT
LOC_Os08g34470
OsAffx.29507.1.S1_at--467--4391Chr08:21498150..21498174 (25 bp)
GCCAAAACGAAAGTGCCAATCCTTT
LOC_Os08g34470
Target Sequence 
TTCTTCCCCTGCACGCAGACGAAGAACTTCTACCGCTGCTGCACGCCACCACTGGCGCCATTGGAGCGAACAACGGCAAG
GCGGGCGGTGAGGAGGACGTGCTGGAGGAGGTCTGGAAGGCGTGGTGCAGGAGGGAGTCAAGGAGGTGGCCATCGTCGTG
GCGGGGCGAGGGCGTGAGGTGGAGGATGAGGCGGGAGAGGCGGAGTGGGGTGAGCTGGGGGAGGAAGCGGGAGAGGGAGG
CGGGAGGCGGGCGACAGCATGGTGGAGAGGTGGCCATGGAGGGCGGTTACGAAGAGGAGGTGAGGTCCTCGCCGGCGAGC
GGTGGGAGGGTGAAGTGCGGCAGCAGTAGCGTGGGCGTCGGCGCCGGCATCGCCAATGGGGACGGACTGGAAGTGAGCCG
CGAGGCCGGTTGCCATCACCAACGTACGAGGTGGGGAGTGGCATGGATCCAATTAACTCTTCTTAGTAATTCGTATATGG
CTGTGCCAAAACGAAAGTGCCAATCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis