Browse Element(s) Details


OsAffx.17329.1.S1_s_at

Description tigr:9636.m03462
TID=OsAffx.17329.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3451011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34470OsAffx.29507.1.S1_at11/118+21498120..21499066hypothetical protein
LOC_Os08g34480Os.53649.1.S1_at10/118+21499282..21503457Splicing factor 3B subunit 5, putative, expressed
LOC_Os08g34490OsAffx.19542.3.S1_x_at7/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.1.S1_x_at3/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.9949.1.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.2.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34500OsAffx.29508.1.S1_at1/118+21510757..21513825expressed protein
LOC_Os08g34510OsAffx.17329.1.S1_s_at11/118+21520515..21521304expressed protein
LOC_Os08g34520OsAffx.17330.1.S1_at11/118+21532703..21532979hypothetical protein
LOC_Os08g34530Os.47463.1.S1_x_at6/118+21539771..21543468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34530Os.14491.2.S1_x_at5/118+21539771..21543468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34540NANA8+21546223..21548904transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17329.1.S1_s_at--843--9871Chr08:21521014..21521038 (25 bp)
TACATCTGCGCCCTGGAGGTCAAGG
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--922--3551Chr08:21520964..21520988 (25 bp)
CATCTACGGCGCTTAATTAGGCTCA
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--983--10091Chr08:21520947..21520971 (25 bp)
TAGGCTCATGCATATGCACCACGGA
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--890--531Chr08:21520903..21520927 (25 bp)
ATCGCCGTTCTGCATGCATGCCAGT
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--932--631Chr08:21520890..21520914 (25 bp)
ATGCATGCCAGTGTCGCCGGCCATG
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--570--31Chr08:21520677..21520701 (25 bp)
ATTGGTCACATATGGGAGTGCGTTA
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--599--7291Chr08:21520660..21520684 (25 bp)
GTGCGTTAATTATCGATCACTTATT
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--599--6451Chr08:21520646..21520670 (25 bp)
GATCACTTATTAATTAGCCTGGCTA
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--516--1691Chr08:21520595..21520619 (25 bp)
AGCCAAACCGTTTATTCTCTTCAGT
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--886--9511Chr08:21520580..21520604 (25 bp)
TCTCTTCAGTTGTTACTACCAAGGA
LOC_Os08g34510
OsAffx.17329.1.S1_s_at--1033--10751Chr08:21520549..21520573 (25 bp)
TTGACTGGTGTTTGTTAGTTGGCTG
LOC_Os08g34510
Target Sequence 
TACATCTGCGCCCTGGAGGTCAAGGTCGCCGTCCTCCGCAAGCTCTCCGCCATCTACGGCGCTTAATTAGGCTCATGCAT
ATGCACCACGGACAGCCATGTCGCCGCCGCCATCGCCGTTCTGCATGCATGCCAGTGTCGCCGGCCATGCACTGTACATG
TAGCCTATGTAGGAAGGAGAACGAAGGCCGGGAGGAGCAGCTAGCCACCTCCATTTCTCTGATCTACCCCTTTCTCTCAG
CTAGCTTAGCTCTCTCCCATCTTCTATCACCCCCCACAACTAGTAGTGTAGTAGCATATCATGTGCCTCCTGTAATACAA
TATGTGATTATTGGTTAATTGGTCACATATGGGAGTGCGTTAATTATCGATCACTTATTAATTAGCCTGGCTAGCTAAAC
TAGCTGCAGAATCAAAGCTAGCCAAACCGTTTATTCTCTTCAGTTGTTACTACCAAGGAAATGTTTTGACTGGTGTTTGT
TAGTTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17329.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis