Browse Element(s) Details


OsAffx.29506.2.S1_at

Description tigr:9636.m03456
TID=OsAffx.29506.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3445011/11hypothetical protein
LOC_Os08g344901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34400Os.53177.1.S1_s_at1/118+21466073..21470054hypothetical protein
LOC_Os08g34410OsAffx.29506.1.S1_x_at11/118+21470969..21471736hypothetical protein
LOC_Os08g34420OsAffx.26000.1.S1_at2/118+21472829..21477232retrotransposon protein, putative, unclassified
LOC_Os08g34430OsAffx.29506.1.S1_x_at11/118+21479244..21479987hypothetical protein
LOC_Os08g34440OsAffx.19542.3.S1_x_at5/118+21486600..21490508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34450OsAffx.29506.2.S1_at11/118+21491884..21492597hypothetical protein
LOC_Os08g34460Os.56957.1.S1_at11/118+21494202..21495262senescence-associated protein DH, putative, expressed
LOC_Os08g34470OsAffx.29507.1.S1_at11/118+21498120..21499066hypothetical protein
LOC_Os08g34480Os.53649.1.S1_at10/118+21499282..21503457Splicing factor 3B subunit 5, putative, expressed
LOC_Os08g34490OsAffx.19542.3.S1_x_at7/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.1.S1_x_at3/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.9949.1.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.2.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34500OsAffx.29508.1.S1_at1/118+21510757..21513825expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29506.2.S1_at--525--1831Chr08:21492377..21492401 (25 bp)
ACGCGCGCAAGGAAGCCGGCAGTTC
LOC_Os08g34450
OsAffx.29506.2.S1_at--64--5431Chr08:21492366..21492390 (25 bp)
GAAGCCGGCAGTTCGGCAGCGTCAT
LOC_Os08g34450
OsAffx.29506.2.S1_at--719--1992Chr08:21505454..21505478 (25 bp)
ACTCCTGCGAGCGTTGGGACGCGCA
LOC_Os08g34490
OsAffx.29506.2.S1_at--262--9171Chr08:21492123..21492147 (25 bp)
TGCCGCGCGGACTCCGTCGAGCGAT
LOC_Os08g34450
OsAffx.29506.2.S1_at--214--3791Chr08:21492032..21492056 (25 bp)
CTCGCCCCAAGAAAGACGCTGTCGG
LOC_Os08g34450
OsAffx.29506.2.S1_at--424--4211Chr08:21492028..21492052 (25 bp)
CCCCAAGAAAGACGCTGTCGGCAGC
LOC_Os08g34450
OsAffx.29506.2.S1_at--571--2751Chr08:21492000..21492024 (25 bp)
AAGAACAACTCCACAAGCCAGACGA
LOC_Os08g34450
OsAffx.29506.2.S1_at--212--5071Chr08:21491956..21491980 (25 bp)
GCAGCCGTTCTCTCAATTTTCTGGT
LOC_Os08g34450
OsAffx.29506.2.S1_at--894--10571Chr08:21491949..21491973 (25 bp)
TTCTCTCAATTTTCTGGTCCGGCCT
LOC_Os08g34450
OsAffx.29506.2.S1_at--316--3191Chr08:21491943..21491967 (25 bp)
CAATTTTCTGGTCCGGCCTTCTTCG
LOC_Os08g34450
OsAffx.29506.2.S1_at--981--4911Chr08:21491919..21491943 (25 bp)
GCTTCGCCGGATCCGGGCATGCTTC
LOC_Os08g34450
Target Sequence 
ACGCGCGCAAGGAAGCCGGCAGTTCGGCAGCGTCATCGTCATCGTCTAGCTCCAGCAGCGGGCTTCCCTGCCGCGCCGAC
TCCTGCGAGCGTTGGGACGCGCACAAGAACAAGAAAGCCGGCGGCTCGGCAGCGTCGTCGTCGTCGAGGGCCAGGGGCGG
GATCAGCCCCGGCCGCGCCGACTCCTACGAACGCTGGGACGCGCACAAGACACCAGGCAGCCCTGCGTCGTCGACCGGCA
GCAGCAGGAGCCCCTGCCGCGCGGACTCCGTCGAGCGATGGGACAGCAACAAGCGGCCGCTGAGCCGCGCGTCGTCGGCC
GAGCGCTGGGACATCAACAAGAAGCCTCGCCCCAAGAAAGACGCTGTCGGCAGCGGCAAGAACAACTCCACAAGCCAGAC
GACGACGATGGTGAAGCCTCCGCAGCCGTTCTCTCAATTTTCTGGTCCGGCCTTCTTCGCTTCGCCGGATCCGGGCATGC
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29506.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis