Browse Element(s) Details


Os.56957.1.S1_at

Description gb:AK110630.1
DB_XREF= gi:32995839
TID=Os.56957.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B08, full insert sequence.
FL= gb:AK110630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3446011/11senescence-associated protein DH, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34400Os.53177.1.S1_s_at1/118+21466073..21470054hypothetical protein
LOC_Os08g34410OsAffx.29506.1.S1_x_at11/118+21470969..21471736hypothetical protein
LOC_Os08g34420OsAffx.26000.1.S1_at2/118+21472829..21477232retrotransposon protein, putative, unclassified
LOC_Os08g34430OsAffx.29506.1.S1_x_at11/118+21479244..21479987hypothetical protein
LOC_Os08g34440OsAffx.19542.3.S1_x_at5/118+21486600..21490508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34450OsAffx.29506.2.S1_at11/118+21491884..21492597hypothetical protein
LOC_Os08g34460Os.56957.1.S1_at11/118+21494202..21495262senescence-associated protein DH, putative, expressed
LOC_Os08g34470OsAffx.29507.1.S1_at11/118+21498120..21499066hypothetical protein
LOC_Os08g34480Os.53649.1.S1_at10/118+21499282..21503457Splicing factor 3B subunit 5, putative, expressed
LOC_Os08g34490OsAffx.19542.3.S1_x_at7/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.1.S1_x_at3/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.9949.1.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.2.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34500OsAffx.29508.1.S1_at1/118+21510757..21513825expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56957.1.S1_at--896--5751Chr08:21494722..21494746 (25 bp)
GACGTTTGCAGGAGCCTGCAGGACA
LOC_Os08g34460
Os.56957.1.S1_at--643--5871Chr08:21494820..21494844 (25 bp)
GAGCTGCAACTTCACGTACGGCGGC
LOC_Os08g34460
Os.56957.1.S1_at--386--1811Chr08:21494885..21494909 (25 bp)
ACCCGGACTGCGACGAGTGGAGCAA
LOC_Os08g34460
Os.56957.1.S1_at--700--1991Chr08:21495035..21495059 (25 bp)
ACTCCGTCGGGTGCTGCGCGTTCAA
LOC_Os08g34460
Os.56957.1.S1_at--491--9111Chr08:21495046..21495070 (25 bp)
TGCTGCGCGTTCAAGAACAGCCGGC
LOC_Os08g34460
Os.56957.1.S1_at--479--2711Chr08:21495103..21495127 (25 bp)
AAGCAGGCCGGATACGCCTAGCGGT
LOC_Os08g34460
Os.56957.1.S1_at--82--9911Chr08:21495115..21495139 (25 bp)
TACGCCTAGCGGTTTCAAAAGTTTG
LOC_Os08g34460
Os.56957.1.S1_at--990--6971Chr08:21495141..21495165 (25 bp)
GTACGAGCAGTAACATAACTACTTG
LOC_Os08g34460
Os.56957.1.S1_at--929--631Chr08:21495206..21495230 (25 bp)
ATGCTTCTGCTGACGCTATATATGT
LOC_Os08g34460
Os.56957.1.S1_at--739--10191Chr08:21495224..21495248 (25 bp)
TATATGTTCGTACTAGTCTTCTGAC
LOC_Os08g34460
Os.56957.1.S1_at--929--1151Chr08:21495238..21495262 (25 bp)
AGTCTTCTGACACCGTGTTTAGCTC
LOC_Os08g34460
Target Sequence 
GACGTTTGCAGGAGCCTGCAGGACAGGAACGAGACGTGGGCGCAGTTCGTCGCCGACGACCTCTCCCCGGTCCAGTCCGG
CTGCTGCAAGCCGCCCACGAGCTGCAACTTCACGTACGGCGGCGGCACGCGGTGGGGCAAGACGGCGAGGCTGAGCTCCG
CCGACCCGGACTGCGACGAGTGGAGCAACGACGCCGACGAGGTCTGCTACGGCTGCCGGTCGTGCAAGGCCGGCGTGGTG
GCCGCGCTCAAGAGGGACTGGAAGCGCGTGGCCATCGTCAACGTCGTCTTCCTCGCCTTCATCGTCGTCGTCTACTCCGT
CGGGTGCTGCGCGTTCAAGAACAGCCGGCGCGACAGTGTCCACCGCCGCAGCGGCGGGTGGAAGCAGGCCGGATACGCCT
AGCGGTTTCAAAAGTTTGAGTACGAGCAGTAACATAACTACTTGTTAATTAGGAATAGTAATATAGTAGTAGTATTAGTT
TCTGATGCTTCTGCTGACGCTATATATGTTCGTACTAGTCTTCTGACACCGTGTTTAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis