Browse Element(s) Details


OsAffx.29508.1.S1_at

Description tigr:9636.m03461
TID=OsAffx.29508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g345001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34440OsAffx.19542.3.S1_x_at5/118+21486600..21490508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34450OsAffx.29506.2.S1_at11/118+21491884..21492597hypothetical protein
LOC_Os08g34460Os.56957.1.S1_at11/118+21494202..21495262senescence-associated protein DH, putative, expressed
LOC_Os08g34470OsAffx.29507.1.S1_at11/118+21498120..21499066hypothetical protein
LOC_Os08g34480Os.53649.1.S1_at10/118+21499282..21503457Splicing factor 3B subunit 5, putative, expressed
LOC_Os08g34490OsAffx.19542.3.S1_x_at7/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.1.S1_x_at3/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.9949.1.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.2.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34500OsAffx.29508.1.S1_at1/118+21510757..21513825expressed protein
LOC_Os08g34510OsAffx.17329.1.S1_s_at11/118+21520515..21521304expressed protein
LOC_Os08g34520OsAffx.17330.1.S1_at11/118+21532703..21532979hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29508.1.S1_at--1003--9131Chr08:21512104..21512563 (25 bp)
TGCGGGAGCAGGTTCTTCCGATAAA
LOC_Os08g34500
OsAffx.29508.1.S1_at--570--3751NONE
CTCTTGGCGAGCGTTCTTTTTTGAA
NONE
OsAffx.29508.1.S1_at--119--10351Chr08:21514153..21514177 (25 bp)
TTTTTTGAATTTAGGCCAGGAGCTC
NONE
OsAffx.29508.1.S1_at--82--3491Chr08:21514169..21514193 (25 bp)
CAGGAGCTCTGGCATTCAATATAGA
NONE
OsAffx.29508.1.S1_at--755--8251Chr08:21515059..21515469 (25 bp)
GGCATGATTACCAGAGACACTTTTG
NONE
OsAffx.29508.1.S1_at--956--5611Chr08:21515460..21515484 (25 bp)
GACACTTTTGTGAAACCTGTGAAGG
NONE
OsAffx.29508.1.S1_at--118--9771Chr08:21516539..21516563 (25 bp)
TAATGCTGAGCACATGCTACTCCAG
NONE
OsAffx.29508.1.S1_at--563--1371Chr08:21516566..21516590 (25 bp)
AGAGCCCTGTCTACGTTGGATAGTC
NONE
OsAffx.29508.1.S1_at--1144--10051Chr08:21516586..21516610 (25 bp)
TAGTCCAGATCGTAGAACCACACAA
NONE
OsAffx.29508.1.S1_at--986--2211Chr08:21516614..21516638 (25 bp)
ACAAGCTCAGTTGCTCACACATGGA
NONE
OsAffx.29508.1.S1_at--1015--6251Chr08:21516637..21516661 (25 bp)
GATGGGCTCCAGGTGCTGCAAAGAA
NONE
Target Sequence 
TGCGGGAGCAGGTTCTTCCGATAAAATGGTAGCTTTGGTGCAAAAGTACAGAGGCTCTTGGCGAGCGTTCTTTTTTGAAT
TTAGGCCAGGAGCTCTGGCATTCAATATAGAAGAGAGTGAGCATCAGTGCAGGCAGAGGCTGGCGGCCTGGCGGGCGAGT
GCAATGACTGGAAATCAGGTTTGGGAGACGAAGAATTTCATGGTTTGGGTGGGTGTTGATTCACTGAAAGTATTAGATGG
CATGATTACCAGAGACACTTTTGTGAAACCTGTGAAGGCTAATGCTGAGCACATGCTACTCCAGCCAGAGCCCTGTCTAC
GTTGGATAGTCCAGATCGTAGAACCACACAAACAACAAGCTCAGTTGCTCACACATGGATGGGCTCCAGGTGCTGCAAAG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis