Browse Element(s) Details


OsAffx.17330.1.S1_at

Description tigr:9636.m03463
TID=OsAffx.17330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3452011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34490OsAffx.19542.3.S1_x_at7/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.1.S1_x_at3/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.9949.1.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34490OsAffx.29506.2.S1_at1/118+21505171..21508882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34500OsAffx.29508.1.S1_at1/118+21510757..21513825expressed protein
LOC_Os08g34510OsAffx.17329.1.S1_s_at11/118+21520515..21521304expressed protein
LOC_Os08g34520OsAffx.17330.1.S1_at11/118+21532703..21532979hypothetical protein
LOC_Os08g34530Os.47463.1.S1_x_at6/118+21539771..21543468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34530Os.14491.2.S1_x_at5/118+21539771..21543468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34540NANA8+21546223..21548904transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17330.1.S1_at--155--8591Chr08:21532921..21532945 (25 bp)
TGGTCTGGCGGCTCCGACTAGTTGG
LOC_Os08g34520
OsAffx.17330.1.S1_at--43--931Chr08:21532810..21532898 (25 bp)
AGGAGAAGATGGTCAAAACCGCCTA
LOC_Os08g34520
OsAffx.17330.1.S1_at--972--5951Chr08:21532808..21532896 (25 bp)
GAGAAGATGGTCAAAACCGCCTAAA
LOC_Os08g34520
OsAffx.17330.1.S1_at--256--1311Chr08:21532804..21532824 (21 bp)
AGATGGTCAAAACCGCCTAAAACAG
LOC_Os08g34520
OsAffx.17330.1.S1_at--852--7811Chr08:21532800..21532824 (25 bp)
GGTCAAAACCGCCTAAAACAGTGCT
LOC_Os08g34520
OsAffx.17330.1.S1_at--90--7091Chr08:21532799..21532823 (25 bp)
GTCAAAACCGCCTAAAACAGTGCTT
LOC_Os08g34520
OsAffx.17330.1.S1_at--444--3271Chr08:21532797..21532821 (25 bp)
CAAAACCGCCTAAAACAGTGCTTGG
LOC_Os08g34520
OsAffx.17330.1.S1_at--8--11Chr08:21532794..21532818 (25 bp)
AACCGCCTAAAACAGTGCTTGGGAG
LOC_Os08g34520
OsAffx.17330.1.S1_at--426--4211Chr08:21532792..21532816 (25 bp)
CCGCCTAAAACAGTGCTTGGGAGAG
LOC_Os08g34520
OsAffx.17330.1.S1_at--1053--6752Chr03:14181626..14181647 (22 bp)
GTTAAGGGTGTTGAATGTCTGGTAT
NONE
OsAffx.17330.1.S1_at--641--2871Chr08:21532735..21532759 (25 bp)
AAGGGTGTTGAATGTCTGGTATTCA
LOC_Os08g34520
Target Sequence 
TGGTCTGGCGGCTCCGACTAGTTGGGGATGAAGAGAATGGGGAAGAAAGGAGAAGATGGTCAAAACCGCCTAAAACAGTG
CTTGGGAGAGGGGAGGGGTTAATTGTCCGGTATGAAAAAGTTAAGGGTGTTGAATGTCTGGTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis