Browse Element(s) Details


OsAffx.29536.4.S1_x_at

Description gb:NM_197678.1
DB_XREF= gi:37536715
TID=OsAffx.29536.4
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J15.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g406902/11hypothetical protein
LOC_Os03g641601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40650Os.54633.1.S1_at11/115+23756204..23759277cation/hydrogen exchanger, putative, expressed
LOC_Os05g40660Os.38751.1.A1_at5/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.1198.1.S1_at2/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.8338.1.S1_x_at1/115+23761324..23766044hypothetical protein
LOC_Os05g40670OsAffx.29607.5.S1_x_at9/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670OsAffx.29607.3.S1_x_at6/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670Os.37083.2.S1_at1/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40680OsAffx.29607.1.S1_x_at8/115+23769647..23773964hypothetical protein
LOC_Os05g40680OsAffx.29607.2.S1_s_at5/115+23769647..23773964hypothetical protein
LOC_Os05g40690OsAffx.15048.1.S1_at10/115+23776180..23778569hypothetical protein
LOC_Os05g40690OsAffx.29536.4.S1_x_at2/115+23776180..23778569hypothetical protein
LOC_Os05g40700Os.33019.1.S1_at11/115+23782547..23786320expressed protein
LOC_Os05g40710NANA5+23788310..23789791GRAS family transcription factor containing protein
LOC_Os05g40720OsAffx.15049.1.S1_at10/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40720Os.55837.1.S1_x_at1/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40730NANA5+23795611..23798327hypothetical protein
LOC_Os05g40740OsAffx.27264.1.S1_s_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40740OsAffx.27264.1.S1_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29536.4.S1_x_at--431--39511Chr11:26341611..26341635 (25 bp)
CGGCAGCTGGCGGTCGTGCTCGGAG
NONE
OsAffx.29536.4.S1_x_at--731--7318Chr07:21066047..21066067 (21 bp)
GTGCTCGGAGCTAGCGGCCAAGTGG
NONE
OsAffx.29536.4.S1_x_at--1088--7817Chr08:2676786..2676805 (20 bp)
GGTCACGGGCGTGACGCCGATCGGG
NONE
OsAffx.29536.4.S1_x_at--358--8058Chr11:26341705..26341729 (25 bp)
GGAGAAAGGAGCTCGGCTCCTTGCC
NONE
OsAffx.29536.4.S1_x_at--4--3958Chr11:26341718..26341742 (25 bp)
CGGCTCCTTGCCGATTTTGGACGAG
NONE
OsAffx.29536.4.S1_x_at--711--4314Chr11:26341723..26341747 (25 bp)
CCTTGCCGATTTTGGACGAGCTGAG
NONE
OsAffx.29536.4.S1_x_at--532--8392Chr10:21356235..21356259 (25 bp)
GGCGCAGGCGGGAATGGTGCCGGTC
NONE
OsAffx.29536.4.S1_x_at--1114--5511Chr10:21356185..21356209 (25 bp)
GAAAAGGGGGCTCTGCCCACGTCAT
NONE
OsAffx.29536.4.S1_x_at--567--9491Chr10:21356174..21356198 (25 bp)
TCTGCCCACGTCATTCAGGGAGAAA
NONE
OsAffx.29536.4.S1_x_at--552--6017Chr08:2363761..2363785 (25 bp)
GAGAGAGGGCTCTGCCTCCGGGAGT
NONE
OsAffx.29536.4.S1_x_at--141--8039Chr08:2363781..2363805 (25 bp)
GGAGTTGGACGCACGCGGCTTGGAG
NONE
Target Sequence 
CGGCAGCTGGCGGTCGTGCTCGGAGCTAGCGGCCAAGTGGCGGCAGAGGCGGTCACGGGCGTGACGCCGATCGGGGAAAA
AGCAAAAAGGGGAGGGAGAAAGGAGCTCGGCTCCTTGCCGATTTTGGACGAGCTGAGGGAGGAGAGAGCGCATGGGAGAG
AGAGGCGCTGCCTCCGCGTCTTGGACACGCGCGCGCTGCGGCGCAGAGGTGGGGGCAGCGGCAGAGTGGGCGCGGGCGGC
TGCGCGGCGCAGGCGGGAATGGTGCCGGTCGGGGAAAAAGCAAAAGGGGAGGGAGGAAAAGGGGGCTCTGCCCACGTCAT
TCAGGGAGAAAGGAGGAGGGAGAGAGGGCTCTGCCTCCGGGAGTTGGACGCACGCGGCTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29536.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis