Browse Element(s) Details


OsAffx.29607.2.S1_s_at

Description gb:NM_185335.1
DB_XREF= gi:34897755
TID=OsAffx.29607.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0173011/11hypothetical protein
LOC_Os08g403105/11transposon protein, putative, unclassified
LOC_Os05g406805/11hypothetical protein
LOC_Os03g213604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g332703/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01670Os.23936.1.S1_at11/116+397679..402494myb family transcription factor, putative, expressed
LOC_Os06g01680Os.9729.3.S1_a_at11/116+402739..409270expressed protein
LOC_Os06g01690Os.32187.1.S1_at11/116+409926..412035Septum site-determining protein minD, putative, expressed
LOC_Os06g01700Os.19955.1.S1_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700Os.19955.1.S2_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710OsAffx.10379.1.A1_at10/116+415531..419161expressed protein
LOC_Os06g01720Os.50408.1.S1_at11/116+419781..424168expressed protein
LOC_Os06g01730OsAffx.29607.2.S1_s_at11/116+425064..429602hypothetical protein
LOC_Os06g01740NANA6+429838..433798hypothetical protein
LOC_Os06g01750OsAffx.14351.1.S1_x_at2/116+436156..437133hypothetical protein
LOC_Os06g01760Os.12825.1.S1_at11/116+438061..440552expressed protein
LOC_Os06g01770Os.4441.1.S1_at11/116+443998..446785expressed protein
LOC_Os06g01780Os.52860.1.A1_at11/116+449988..452733expressed protein
LOC_Os06g01790Os.52389.1.S1_x_at11/116+453863..456206expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29607.2.S1_s_at--125--2795Chr08:20595852..20595876 (25 bp)
AAGAGGATCCAAATCGCAGATGGAA
LOC_Os08g33270
OsAffx.29607.2.S1_s_at--791--6011Chr06:425127..425151 (25 bp)
GAGAGTATAATGTCAGAATCAAAGA
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--810--5574Chr06:425171..425195 (25 bp)
GAAATCAAAGACAACTTCTGAACAG
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--965--10574Chr06:425186..425210 (25 bp)
TTCTGAACAGAAAGTTGAGATCCAT
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--678--6655Chr08:20595952..20595976 (25 bp)
GTTGAGATCCATACAAAGGAAACAC
LOC_Os08g33270
OsAffx.29607.2.S1_s_at--506--951Chr06:425215..425239 (25 bp)
AGGAAACACAACATCTGGAGAACGC
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--874--2191Chr06:425222..425246 (25 bp)
ACAACATCTGGAGAACGCAGAGGAA
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--317--5531Chr06:425272..425296 (25 bp)
GAAACAAGAAGGCTCCAGTTCAAAG
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--417--2472Chr06:428651..428671 (21 bp)
AACACAGGTGTCATACAAAAGGAGA
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--145--5252Chr06:428651..428671 (21 bp)
GAATCAGGTGTCATACAAAAGGAGA
LOC_Os06g01730
OsAffx.29607.2.S1_s_at--557--5515Chr08:20597733..20597757 (25 bp)
GAAACAAAGCAAGAGTTCTATGGAA
LOC_Os08g33270
Target Sequence 
AAGAGGATCCAAATCGCAGATGGAAGAAGGGGAGAGTATAATGTCAGAATCAAAGAGTAGTTCTAGAGGAAAGAAGAAAT
CAAAGACAACTTCTGAACAGAAAGTTGAGATCCATACAAAGGAAACACAACATCTGGAGAACGCAGAGGAAAAACAAGAG
GAAGGCAAGATTAAGAGAAACAAGAAGGCTCCAGTTCAAAGAAAAGCATCCAGGGCAATGTACACAGAACAATTAGAAAT
CACATTTCATACAGGTGTCATAGAAAAGGAAAAAGAATGTAAAAGTTCTAAGGAAAAAGAAAGAAAAAACACAGGTGTCA
TACAAAAGGAGAAACAAAGCAAGAGTTCTATGGAAATAGAAGAAAAAGAATCAGGTGTCATACAAAAGGAGAAACAAAGC
AAGAGTTCTATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29607.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis