Browse Element(s) Details


Os.12825.1.S1_at

Description gb:AK122178.1
DB_XREF= gi:37991824
TID=Os.12825.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU029388(E30287),D49277(S16474) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F16G20, picA protein. (AL031326) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148N22, full insert sequence.
FL= gb:AK105650.1 gb:AK105911.1 gb:AK073364.1 gb:AK122178.1 gb:AK105782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0176011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01700Os.19955.1.S1_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700Os.19955.1.S2_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710OsAffx.10379.1.A1_at10/116+415531..419161expressed protein
LOC_Os06g01720Os.50408.1.S1_at11/116+419781..424168expressed protein
LOC_Os06g01730OsAffx.29607.2.S1_s_at11/116+425064..429602hypothetical protein
LOC_Os06g01740NANA6+429838..433798hypothetical protein
LOC_Os06g01750OsAffx.14351.1.S1_x_at2/116+436156..437133hypothetical protein
LOC_Os06g01760Os.12825.1.S1_at11/116+438061..440552expressed protein
LOC_Os06g01770Os.4441.1.S1_at11/116+443998..446785expressed protein
LOC_Os06g01780Os.52860.1.A1_at11/116+449988..452733expressed protein
LOC_Os06g01790Os.52389.1.S1_x_at11/116+453863..456206expressed protein
LOC_Os06g01800OsAffx.15220.1.S1_s_at11/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800Os.55780.1.S1_at10/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800OsAffx.15220.2.S1_s_at8/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800Os.48472.1.A1_at7/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800OsAffx.14814.1.S1_at1/116+457997..464513retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01810NANA6+465385..466183hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12825.1.S1_at--408--9311Chr06:438589..438613 (25 bp)
TCCCCGTCGTGGACAACATCAGCTA
LOC_Os06g01760
Os.12825.1.S1_at--429--8151Chr06:438579..438603 (25 bp)
GGACAACATCAGCTACCAGGACGTG
LOC_Os06g01760
Os.12825.1.S1_at--641--391Chr06:438572..438596 (25 bp)
ATCAGCTACCAGGACGTGGTGGCCA
LOC_Os06g01760
Os.12825.1.S1_at--601--9211Chr06:438458..438482 (25 bp)
TCCAAGTCGCGCAAGTACCCGTGGA
LOC_Os06g01760
Os.12825.1.S1_at--211--1151Chr06:438454..438478 (25 bp)
AGTCGCGCAAGTACCCGTGGACCTG
LOC_Os06g01760
Os.12825.1.S1_at--508--8431Chr06:438285..438309 (25 bp)
GGCCTCCATCTAGCTGATCTGGCTG
LOC_Os06g01760
Os.12825.1.S1_at--532--451Chr06:438278..438302 (25 bp)
ATCTAGCTGATCTGGCTGCAGCCTG
LOC_Os06g01760
Os.12825.1.S1_at--619--9851Chr06:438217..438241 (25 bp)
TACAACACTAGCCTCTGCGTGCGGT
LOC_Os06g01760
Os.12825.1.S1_at--742--3811Chr06:438106..438130 (25 bp)
CTCCTTGCTCTGCAATTATGTAACT
LOC_Os06g01760
Os.12825.1.S1_at--724--3631Chr06:438103..438127 (25 bp)
CTTGCTCTGCAATTATGTAACTTAA
LOC_Os06g01760
Os.12825.1.S1_at--270--8731Chr06:438088..438112 (25 bp)
TGTAACTTAAACTTCAGTTCGTGAA
LOC_Os06g01760
Target Sequence 
TCCCCGTCGTGGACAACATCAGCTACCAGGACGTGGTGGCCACGGGGGTGTACAAGGAGGCCGCCAGGCTGGAGGGCATC
CAGGGCGCCCCCTTCCGCGGCATCTGCATCGCCAACGTCACCGCCACGCTCTCCAAGTCGCGCAAGTACCCGTGGACCTG
CACCGACATCGAGGGGGTGTCCACCGGCGTCACGCCGGCGCCGTGCCAGCCGCTGCAGGGGGCGCACGATGGCGCCTGCC
CGTTCCCCACGGACACGCTGCCCATCGACCAGCTCGTCATGCAGCAGTGCGCCTACTCCGTCCCGGCCTCCATCTAGCTG
ATCTGGCTGCAGCCTGCAGCGCTGTAGCTGTAGCTGTGACCGTCGTTACTACTACAACACTAGCCTCTGCGTGCGGTCTT
CTGAAACAAAAACAATAACCCAGAGTGACCTTTCTGACTGTGCTGCTTCACAGCGCTCGCTCTGCGTCATGTCAGTGCTG
CCTCTCCTTGCTCTGCAATTATGTAACTTAAACTTCAGTTCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis