Browse Element(s) Details


OsAffx.14814.1.S1_at

Description tigr:9633.m02223
TID=OsAffx.14814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2481011/11hypothetical protein
LOC_Os06g018001/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24770Os.7487.1.S1_at11/115+14277998..14281377Reticulon family protein, expressed
LOC_Os05g24780NANA5+14282818..14283411EF hand family protein, expressed
LOC_Os05g24790OsAffx.14813.1.S1_at10/115+14290279..14292362transposase, putative
LOC_Os05g24800NANA5+14293448..14297093retrotransposon, putative, centromere-specific
LOC_Os05g24810OsAffx.14814.1.S1_at11/115+14305402..14308183hypothetical protein
LOC_Os05g24810OsAffx.6425.1.S1_at2/115+14305402..14308183hypothetical protein
LOC_Os05g24820NANA5+14311133..14311879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24830NANA5+14314604..14315755hypothetical protein
LOC_Os05g24840Os.46995.1.S1_x_at2/115+14318688..14321387retrotransposon protein, putative, unclassified
LOC_Os05g24840Os.46995.1.S1_at1/115+14318688..14321387retrotransposon protein, putative, unclassified
LOC_Os05g24850NANA5+14321675..14324116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24860NANA5+14324236..14327139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24870NANA5+14327682..14327951hypothetical protein
LOC_Os05g24880Os.15265.1.A1_at10/115+14329824..14335860oxidoreductase, zinc-binding dehydrogenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14814.1.S1_at--727--671Chr05:14306560..14306584 (25 bp)
ATGAAATTTCTTGCTTCCTGCATCC
LOC_Os05g24810
OsAffx.14814.1.S1_at--503--3832Chr05:14306577..14306601 (25 bp)
CTGCATCCTGTCTCTGATATTCAGT
LOC_Os05g24810
OsAffx.14814.1.S1_at--654--8751Chr05:14306602..14306626 (25 bp)
TGTTTATTCTGTCAATTTTTCGGCA
LOC_Os05g24810
OsAffx.14814.1.S1_at--635--171Chr05:14306616..14306640 (25 bp)
ATTTTTCGGCAGGAATTATCAATTC
LOC_Os05g24810
OsAffx.14814.1.S1_at--57--9751Chr05:14306634..14306658 (25 bp)
TCAATTCATCTTAGTGCTTTGCATT
LOC_Os05g24810
OsAffx.14814.1.S1_at--781--5451Chr05:14307047..14307071 (25 bp)
GAACTGGAACACAAGCTAAGCTACA
LOC_Os05g24810
OsAffx.14814.1.S1_at--787--1571Chr05:14307065..14307089 (25 bp)
AGCTACATGTTCAAGGATACTCAGG
LOC_Os05g24810
OsAffx.14814.1.S1_at--646--9352Chr05:14307722..14307746 (25 bp)
TCGACCGAATTACCCTCTTGAACCA
LOC_Os05g24810
OsAffx.14814.1.S1_at--706--10392Chr05:14307818..14307952 (25 bp)
TTTTGATCCTACGTGCGTTCCATCA
LOC_Os05g24810
OsAffx.14814.1.S1_at--787--9931Chr05:14307827..14307961 (25 bp)
TACGTGCGTTCCATCAGAGGCCGCA
LOC_Os05g24810
OsAffx.14814.1.S1_at--63--8411Chr05:14308016..14308040 (25 bp)
GGCCTCATAGTCACCGGGATCGCCG
LOC_Os05g24810
Target Sequence 
ATGAAATTTCTTGCTTCCTGCATCCTGTCTCTGATATTCAGTTGTTTATTCTGTCAATTTTTCGGCAGGAATTATCAATT
CATCTTAGTGCTTTGCATTGTCAAATGGCAGATATGGGAGCAAGACAACAGGTGATGATGAGAACTGGAACACAAGCTAA
GCTACATGTTCAAGGATACTCAGGAAAAGGTACGAATTACCCCCTGAACTATCACGGTCGACCGAATTACCCTCTTGAAC
CACAAAACCGGATATTCTTCACCCCCAACTTTGCAAACCAGACAAATAACCCCCCTGGCTTAATCCGCGGTGGTTTTGAT
CCTACGTGCGTTCCATCAGAGGCCGCACCTGTCAGGGCCGACGCTGCCGCCGACGTCCAGACCGGCTGCCGCACCATGCT
CGGCCTCATAGTCACCGGGATCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis