Browse Element(s) Details


OsAffx.14813.1.S1_at

Description tigr:9633.m02219
TID=OsAffx.14813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2479010/11transposase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24750NANA5+14273118..14273874retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24760NANA5+14277112..14277753Harpin-induced protein 1 containing protein
LOC_Os05g24770Os.7487.1.S1_at11/115+14277998..14281377Reticulon family protein, expressed
LOC_Os05g24780NANA5+14282818..14283411EF hand family protein, expressed
LOC_Os05g24790OsAffx.14813.1.S1_at10/115+14290279..14292362transposase, putative
LOC_Os05g24800NANA5+14293448..14297093retrotransposon, putative, centromere-specific
LOC_Os05g24810OsAffx.14814.1.S1_at11/115+14305402..14308183hypothetical protein
LOC_Os05g24810OsAffx.6425.1.S1_at2/115+14305402..14308183hypothetical protein
LOC_Os05g24820NANA5+14311133..14311879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24830NANA5+14314604..14315755hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14813.1.S1_at--425--831Chr05:14291072..14291096 (25 bp)
ATGGTTGTTCTCTCATGTCAGATGG
LOC_Os05g24790
OsAffx.14813.1.S1_at--922--2571Chr05:14291114..14291138 (25 bp)
AACGTCACTTAGTCAATTTCCTTGT
LOC_Os05g24790
OsAffx.14813.1.S1_at--326--7631Chr05:14291152..14291176 (25 bp)
GGGACATTCTTCTTGGAGTCTATTG
LOC_Os05g24790
OsAffx.14813.1.S1_at--424--6511Chr05:14291176..14291200 (25 bp)
GATATATTACACCTAGCAGCTGATG
LOC_Os05g24790
OsAffx.14813.1.S1_at--984--3251Chr05:14291327..14291351 (25 bp)
CAACTTTGTATTGGACCCCATGTGC
LOC_Os05g24790
OsAffx.14813.1.S1_at--1037--4171Chr05:14291354..14291378 (25 bp)
CCCACTGCTTGGATCTCATGTTGGA
LOC_Os05g24790
OsAffx.14813.1.S1_at--1033--2231Chr05:14291390..14291414 (25 bp)
AAATTCCTATGTTGAGCCCTTCTAT
LOC_Os05g24790
OsAffx.14813.1.S1_at--864--5871Chr05:14291403..14291427 (25 bp)
GAGCCCTTCTATTGCAAAAGCCAAG
LOC_Os05g24790
OsAffx.14813.1.S1_at--428--291Chr05:14291447..14291471 (25 bp)
ATAGTCACAGTAGGCTTCTTGATGC
LOC_Os05g24790
OsAffx.14813.1.S1_at--396--891NONE
AGGCCTGCAGCTACACGGGTTGCTA
NONE
OsAffx.14813.1.S1_at--133--9091Chr05:14291526..14291550 (25 bp)
TGCTACTGCTTTTCTCACATTGCAA
LOC_Os05g24790
Target Sequence 
ATGGTTGTTCTCTCATGTCAGATGGGTGGATAGACAAAAGAAAACGTCACTTAGTCAATTTCCTTGTCAATAGTCTAGCA
GGGACATTCTTCTTGGAGTCTATTGATATATTACACCTAGCAGCTGATGCACAATTGATTGCAAATCTATTGGAGAAGCA
AATTGATATTATCCGAAGAAATTATGTGGTTCGGATTGTAAGTGACAATGGTTCAAATTATAAGGCAGCAGGTAGACTTC
TAATGGAAAGGATTCCAACTTTGTATTGGACCCCATGTGCTGCCCACTGCTTGGATCTCATGTTGGAGGACATTATGAAA
ATTCCTATGTTGAGCCCTTCTATTGCAAAAGCCAAGAAAGTTACTACATTTATCTATAGTCACAGTAGGCTTCTTGATGC
TATGAGGAAGAAGACAAATGGAGCCGACATTGTGAGGCCTGCAGCTACACGGGTTGCTACTGCTTTTCTCACATTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis