Browse Element(s) Details


Os.7487.1.S1_at

Description gb:AK069307.1
DB_XREF= gi:32979331
TID=Os.7487.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010J24, full insert sequence.
FL= gb:AK069307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2477011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24720Os.25754.2.S1_x_at4/115+14251461..14254942retrotransposon protein, putative, unclassified
LOC_Os05g24720Os.53479.1.S1_x_at1/115+14251461..14254942retrotransposon protein, putative, unclassified
LOC_Os05g24720OsAffx.31069.2.S1_x_at1/115+14251461..14254942retrotransposon protein, putative, unclassified
LOC_Os05g24730OsAffx.20387.1.S1_x_at1/115+14255084..14260998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24740NANA5+14263121..14264398hypothetical protein
LOC_Os05g24750NANA5+14273118..14273874retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24760NANA5+14277112..14277753Harpin-induced protein 1 containing protein
LOC_Os05g24770Os.7487.1.S1_at11/115+14277998..14281377Reticulon family protein, expressed
LOC_Os05g24780NANA5+14282818..14283411EF hand family protein, expressed
LOC_Os05g24790OsAffx.14813.1.S1_at10/115+14290279..14292362transposase, putative
LOC_Os05g24800NANA5+14293448..14297093retrotransposon, putative, centromere-specific
LOC_Os05g24810OsAffx.14814.1.S1_at11/115+14305402..14308183hypothetical protein
LOC_Os05g24810OsAffx.6425.1.S1_at2/115+14305402..14308183hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7487.1.S1_at--90--4911Chr05:14279394..14279418 (25 bp)
GCTTCAGCTTCTTGACTTTGTCTTA
LOC_Os05g24770
Os.7487.1.S1_at--811--5291Chr05:14278452..14278476 (25 bp)
GAAGGCCCTAATCGAGCTCAAGAAG
LOC_Os05g24770
Os.7487.1.S1_at--19--3251Chr05:14278407..14278431 (25 bp)
CAAGCTTCTCTCAAAGATCCCAATG
LOC_Os05g24770
Os.7487.1.S1_at--807--10271Chr05:14278328..14278352 (25 bp)
TTTGCATGTTTCATCTTCAGCTCAG
LOC_Os05g24770
Os.7487.1.S1_at--236--9671Chr05:14278312..14278336 (25 bp)
TCAGCTCAGCACATCACCAAAGTAG
LOC_Os05g24770
Os.7487.1.S1_at--430--2831Chr05:14278293..14278317 (25 bp)
AAGTAGTCTATTTGGGTTTCCTCTG
LOC_Os05g24770
Os.7487.1.S1_at--662--7871Chr05:14278279..14278303 (25 bp)
GGTTTCCTCTGTCATCTTATAGCAA
LOC_Os05g24770
Os.7487.1.S1_at--198--831Chr05:14278230..14278254 (25 bp)
ATGGTTTTGATTCTCGAGCATCCGA
LOC_Os05g24770
Os.7487.1.S1_at--354--5751Chr05:14278162..14278186 (25 bp)
GACGGTCACATGGAGTAGTTGCTTA
LOC_Os05g24770
Os.7487.1.S1_at--163--10271Chr05:14278111..14278135 (25 bp)
TTTGAGCTTCTGTTTGGTCACAAGA
LOC_Os05g24770
Os.7487.1.S1_at--695--6551Chr05:14278001..14278025 (25 bp)
GATTAATTCATTTTGGTCCTTTCTG
LOC_Os05g24770
Target Sequence 
GCTTCAGCTTCTTGACTTTGTCTTACACCATTTNCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGAT
GAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAA
GATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCT
TCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAG
AAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACA
TGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACAC
AATTTACTATGATTATTATTTGCATGTATTATTTGAGGTATTCTGAATGCTGAAGACCATACTAATTAGCAGATTAATTC
ATTTTGGTCCTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis