Browse Element(s) Details

Os.48472.1.A1_at

Description

gb:CR283321
DB_XREF= gi:44669887
DB_XREF=CR283321
CLONE=p640h12p3
TID=Os.48472.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48472 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01800	7/11	retrotransposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01740	NA	NA	6	+	429838..433798	hypothetical protein
LOC_Os06g01750	OsAffx.14351.1.S1_x_at	2/11	6	+	436156..437133	hypothetical protein
LOC_Os06g01760	Os.12825.1.S1_at	11/11	6	+	438061..440552	expressed protein
LOC_Os06g01770	Os.4441.1.S1_at	11/11	6	+	443998..446785	expressed protein
LOC_Os06g01780	Os.52860.1.A1_at	11/11	6	+	449988..452733	expressed protein
LOC_Os06g01790	Os.52389.1.S1_x_at	11/11	6	+	453863..456206	expressed protein
LOC_Os06g01800	OsAffx.15220.1.S1_s_at	11/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.55780.1.S1_at	10/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.15220.2.S1_s_at	8/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.48472.1.A1_at	7/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.14814.1.S1_at	1/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01810	NA	NA	6	+	465385..466183	hypothetical protein
LOC_Os06g01820	OsAffx.10379.1.A1_at	2/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01820	Os.51646.1.S1_at	1/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01830	OsAffx.15222.1.S1_at	9/11	6	+	472151..472577	hypothetical protein
LOC_Os06g01840	Os.12745.1.S1_at	11/11	6	+	476099..478173	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01850	Os.10696.1.S1_at	11/11	6	+	478199..480658	Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os06g01860	Os.36672.1.S1_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01860	Os.36672.2.S1_x_at	11/11	6	+	483347..484309	expressed protein
LOC_Os06g01870	NA	NA	6	+	488917..489695	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.48472.1.A1_at--190--223	1	Chr06:462140..462164 (25 bp)	ACAATGCTAGAGGTCCTCCAAGATG	LOC_Os06g01800
Os.48472.1.A1_at--537--615	1	Chr06:462131..462155 (25 bp)	GAGGTCCTCCAAGATGGGTTCTATT	LOC_Os06g01800
Os.48472.1.A1_at--923--77	1	NONE	ATGGGTTCTATTTGAAGAGTTCCTT	NONE
Os.48472.1.A1_at--645--131	1	NONE	AGAGTTCCTTAGGTTCTTTCTGCCG	NONE
Os.48472.1.A1_at--308--961	1	Chr06:462094..462118 (25 bp)	TAGGTTCTTTCTGCCGGTCGTCCGG	LOC_Os06g01800
Os.48472.1.A1_at--958--957	1	Chr06:462058..462082 (25 bp)	TCTTGCCAGTTAGCTTCTCAGCTTA	LOC_Os06g01800
Os.48472.1.A1_at--514--155	1	Chr06:462047..462071 (25 bp)	AGCTTCTCAGCTTACAGGCGAACTA	LOC_Os06g01800
Os.48472.1.A1_at--945--345	1	NONE	CAGGCGAACTAATTCAATTCAGTAG	NONE
Os.48472.1.A1_at--863--313	1	NONE	AATTCAGTAGTTCATTGTACAACAG	NONE
Os.48472.1.A1_at--932--645	1	Chr06:461994..462018 (25 bp)	GATAACTGATTGCTTCTATTCTATG	LOC_Os06g01800
Os.48472.1.A1_at--327--133	1	Chr06:461966..461990 (25 bp)	AGCGTTTTGGGATGTTGTTACTCTC	LOC_Os06g01800

Target Sequence

ACAATGCTAGAGGTCCTCCAAGATGGGTTCTATTTGAAGAGTTCCTTAGGTTCTTTCTGCCGGTCGTCCGGCCTCTGTCC
CCTCTTGCCAGTTAGCTTCTCAGCTTACAGGCGAACTAATTCAATTCAGTAGTTCATTGTACAACAGATAACTGATTGCT
TCTATTCTATGAGAAGCGTTTTGGGATGTTGTTACTCTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis