Browse Element(s) Details


OsAffx.14351.1.S1_x_at

Description tigr:9632.m04844
TID=OsAffx.14351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4988011/11hypothetical protein
LOC_Os06g017502/11hypothetical protein
LOC_Os09g042301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49850NANA4+29497882..29498387expressed protein
LOC_Os04g49860OsAffx.14350.1.S1_at11/114+29500458..29510657DNA replication helicase, putative, expressed
LOC_Os04g49870OsAffx.3052.1.S1_at11/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49870Os.29800.1.S1_x_at2/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49880OsAffx.14351.1.S1_x_at11/114+29520965..29521246hypothetical protein
LOC_Os04g49890Os.27657.1.A1_at11/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49890Os.24644.1.S1_at9/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49900Os.20283.1.S1_at9/114+29535851..29543031ABC transporter family protein, expressed
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14351.1.S1_x_at--468--3391Chr04:29521171..29521195 (25 bp)
CAGCGGCAACGCCTGTCGGTGCAGA
LOC_Os04g49880
OsAffx.14351.1.S1_x_at--462--1631Chr04:29521170..29521194 (25 bp)
AGCGGCAACGCCTGTCGGTGCAGAG
LOC_Os04g49880
OsAffx.14351.1.S1_x_at--846--3251Chr04:29521165..29521189 (25 bp)
CAACGCCTGTCGGTGCAGAGGCAGA
LOC_Os04g49880
OsAffx.14351.1.S1_x_at--117--9051Chr04:29521152..29521176 (25 bp)
TGCAGAGGCAGAGGCCTCAGAGCTC
LOC_Os04g49880
OsAffx.14351.1.S1_x_at--925--8911Chr04:29521058..29521082 (25 bp)
TGACCACGGTCGCAGGAGGCATGAC
LOC_Os04g49880
OsAffx.14351.1.S1_x_at--972--9992Chr04:29521020..29521044 (25 bp)
TAGCTGAGGACATGGCAGACGGCTA
LOC_Os04g49880
OsAffx.14351.1.S1_x_at--552--1613Chr03:7175724..7176105 (25 bp)
AGCTGAGGACATGGCAGACGGCTAC
NONE
OsAffx.14351.1.S1_x_at--370--4731Chr04:29521018..29521042 (25 bp)
GCTGAGGACATGGCAGACGGCTACA
LOC_Os04g49880
OsAffx.14351.1.S1_x_at--468--6193Chr09:2234395..2234747 (25 bp)
GAGGACATGGCAGACGGCTACATCG
LOC_Os09g04230
OsAffx.14351.1.S1_x_at--187--3375Chr06:436796..436818 (23 bp)
CAGACGGCTACATCGGACCGGCGTG
LOC_Os06g01750
OsAffx.14351.1.S1_x_at--525--3932Chr06:436800..436868 (25 bp)
CGGCTACATCGGACCGGCGTGGCAT
LOC_Os06g01750
Target Sequence 
CAGCGGCAACGCCTGTCGGTGCAGAGGCAGAGGCCTCAGAGCTCGTCGCATCGGCGGCGTCAGCGGCTGCTGTGGCACGG
TGGTGCGTTCGGCAGCAGCGGCTGCGGTGGCGGTGACCACGGTCGCAGGAGGCATGACGGCCTCGGACGACTAGCTGAGG
ACATGGCAGACGGCTACATCGGACCGGCGTGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14351.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis