Browse Element(s) Details


OsAffx.14350.1.S1_at

Description tigr:9632.m04842
TID=OsAffx.14350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4986011/11DNA replication helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49810OsAffx.21897.5.S1_x_at4/114+29475814..29478738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49820NANA4+29480189..29480698retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49830NANA4+29484683..29485930hypothetical protein
LOC_Os04g49840OsAffx.24949.3.S1_x_at1/114+29490079..29493431retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49850NANA4+29497882..29498387expressed protein
LOC_Os04g49860OsAffx.14350.1.S1_at11/114+29500458..29510657DNA replication helicase, putative, expressed
LOC_Os04g49870OsAffx.3052.1.S1_at11/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49870Os.29800.1.S1_x_at2/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49880OsAffx.14351.1.S1_x_at11/114+29520965..29521246hypothetical protein
LOC_Os04g49890Os.27657.1.A1_at11/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49890Os.24644.1.S1_at9/114+29523656..29531150ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0009616biological_processvirus induced gene silencing
GO:0003724molecular_functionRNA helicase activity
GO:0004003molecular_functionATP-dependent DNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14350.1.S1_at--678--2391Chr04:29508769..29508793 (25 bp)
AAACTCAAGCTTTCTGGCAGAGGTC
LOC_Os04g49860
OsAffx.14350.1.S1_at--386--1331Chr04:29508787..29508811 (25 bp)
AGAGGTCCTGTTCGCTTGAAGCTGA
LOC_Os04g49860
OsAffx.14350.1.S1_at--1153--2771Chr04:29508953..29508974 (22 bp)
AAGAGATCTTGAACCCTGATAGGGC
LOC_Os04g49860
OsAffx.14350.1.S1_at--1153--271Chr04:29508968..29508992 (25 bp)
ATAGGGCTGTCGTCTTTGCGAACAC
LOC_Os04g49860
OsAffx.14350.1.S1_at--1019--5331Chr04:29509070..29509094 (25 bp)
GAAGTACCAGCTTTTGAGGCCAAGG
LOC_Os04g49860
OsAffx.14350.1.S1_at--642--5791Chr04:29509591..29509615 (25 bp)
GACGCTTCAGTTGAGGTTCATACAA
LOC_Os04g49860
OsAffx.14350.1.S1_at--612--10051Chr04:29510085..29510109 (25 bp)
TAGTATCTTTTGTACGGTCCAACGG
LOC_Os04g49860
OsAffx.14350.1.S1_at--998--2211Chr04:29510114..29510138 (25 bp)
ACAAGGGCTAGTGGTTCTTCTTTGC
LOC_Os04g49860
OsAffx.14350.1.S1_at--1058--11Chr04:29510145..29510169 (25 bp)
ATTGGCACAGGATCAACGTTGTCTT
LOC_Os04g49860
OsAffx.14350.1.S1_at--124--5411Chr04:29510498..29510522 (25 bp)
GAAGCTCATCATGGTGGGATCCGCT
LOC_Os04g49860
OsAffx.14350.1.S1_at--581--9011Chr04:29510522..29510546 (25 bp)
TGCAACTCTTTCAACGATCCCATTG
LOC_Os04g49860
Target Sequence 
AAACTCAAGCTTTCTGGCAGAGGTCCTGTTCGCTTGAAGCTGAAAGAGATCTTGAACCCTGATAGGGCTGTCGTCTTTGC
GAACACAGATGAAGTACCAGCTTTTGAGGCCAAGGAACATAGAACTGTGAACAATCCTACAGAAGCATTAATTGTTTCAT
GGATCACCAATGAATTGCTAAAGAGAGGTGTAGCTCAAGATGGGGTTGGTATAATAACTCCATATAATGCCCAAGCAAAT
CTCATTCAGCAACATGTAGACGCTTCAGTTGAGGTTCATACAATTGACAAGTACCAGGGGAGGGATAAAGAATGCATTAT
AGTATCTTTTGTACGGTCCAACGGGAATACAAGGGCTAGTGGTTCTTCTTTGCTTGGTGATTGGCACAGGATCAACGTTG
TCTTGACACGTGCAAAGAAGAAGCTCATCATGGTGGGATCCGCTGCAACTCTTTCAACGATCCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis