Browse Element(s) Details


Os.27657.1.A1_at

Description gb:CB682256
DB_XREF= gi:29685981
DB_XREF=OSJNEf09F21.r
CLONE=OSJNEf09F21
TID=Os.27657.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27657 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T50518 (A.thaliana) T50518 ABC transporter-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4989011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49860OsAffx.14350.1.S1_at11/114+29500458..29510657DNA replication helicase, putative, expressed
LOC_Os04g49870OsAffx.3052.1.S1_at11/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49870Os.29800.1.S1_x_at2/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49880OsAffx.14351.1.S1_x_at11/114+29520965..29521246hypothetical protein
LOC_Os04g49890Os.27657.1.A1_at11/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49890Os.24644.1.S1_at9/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49900Os.20283.1.S1_at9/114+29535851..29543031ABC transporter family protein, expressed
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27657.1.A1_at--502--651Chr04:29530515..29530539 (25 bp)
ATGAATTCAGGGATTGCACCGTGCT
LOC_Os04g49890
Os.27657.1.A1_at--1002--5651Chr04:29530571..29530595 (25 bp)
GACAGTGATCTCATTCTTGTCTTCA
LOC_Os04g49890
Os.27657.1.A1_at--456--5251Chr04:29530680..29530704 (25 bp)
GAATCATAGAGTACGACACACCATT
LOC_Os04g49890
Os.27657.1.A1_at--142--10151Chr04:29530754..29530778 (25 bp)
TATTCACGGAGATCAAAGGGCTTTT
LOC_Os04g49890
Os.27657.1.A1_at--776--2871Chr04:29530769..29530793 (25 bp)
AAGGGCTTTTAGCAGTGCGGCACAC
LOC_Os04g49890
Os.27657.1.A1_at--1122--7271Chr04:29530783..29530807 (25 bp)
GTGCGGCACACTACAATTTGAAAAG
LOC_Os04g49890
Os.27657.1.A1_at--932--1531Chr04:29530818..29530842 (25 bp)
AGCATGAAGCCAACCAAGCGCACTA
LOC_Os04g49890
Os.27657.1.A1_at--492--4591Chr04:29530835..29530859 (25 bp)
GCGCACTACAACAACACACTTGGGT
LOC_Os04g49890
Os.27657.1.A1_at--275--9971Chr04:29530940..29530964 (25 bp)
TACCGTTGATGTTGGCTAGCTCTTA
LOC_Os04g49890
Os.27657.1.A1_at--839--4611Chr04:29530958..29530982 (25 bp)
GCTCTTAGGTTCAGGATGATCCCCA
LOC_Os04g49890
Os.27657.1.A1_at--515--5071Chr04:29531071..29531095 (25 bp)
GCAGCGAAGCTACTCATAGTCCGAA
LOC_Os04g49890
Target Sequence 
ATGAATTCAGGGATTGCACCGTGCTGACAATAGCACATAGAATTCACACAGTTATTGACAGTGATCTCATTCTTGTCTTC
AGTGAAGGAAGAATCATAGAGTACGACACACCATTGAAATTACTGGAGAACGAGAACTCTGAATTCTCTAGGCTCATAAA
GGAGTATTCACGGAGATCAAAGGGCTTTTAGCAGTGCGGCACACTACAATTTGAAAAGCGAGGAGAACAGCATGAAGCCA
ACCAAGCGCACTACAACAACACACTTGGGTAGAAAGGGGCCGCACTCCACACGATCCCAAATGACAAAGAACGCACAAAA
CCCACAGAAATATACACCAACTAAGGGGCCTACCGTTGATGTTGGCTAGCTCTTAGGTTCAGGATGATCCCCAAGTAAAG
AAAAGAAACACAATTTATGTAGAGTACTGTAAGTATGAGCTCAAGCTGAAGTGGGGGAAACTTTCCCCCAACTCATGCAA
TGCAGCGAAGCTACTCATAGTCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27657.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis