Browse Element(s) Details


OsAffx.26670.2.S1_at

Description tigr:9632.m05841
TID=OsAffx.26670.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4992011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49890Os.27657.1.A1_at11/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49890Os.24644.1.S1_at9/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49900Os.20283.1.S1_at9/114+29535851..29543031ABC transporter family protein, expressed
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein
LOC_Os04g49930OsAffx.26670.1.S1_at11/114+29557342..29564508hypothetical protein
LOC_Os04g49930Os.10719.1.S1_at1/114+29557342..29564508hypothetical protein
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26670.2.S1_at--73--8611Chr04:29551657..29551681 (25 bp)
TGGTGTGCTTGCTGGGTCATCCAAA
LOC_Os04g49920
OsAffx.26670.2.S1_at--98--391Chr04:29551594..29551618 (25 bp)
ATCACCTGTTAAGCCACTCAATGAC
LOC_Os04g49920
OsAffx.26670.2.S1_at--615--6911Chr04:29551543..29551567 (25 bp)
GTATGACGGTTCTTTGCAGGATGCA
LOC_Os04g49920
OsAffx.26670.2.S1_at--821--5491Chr04:29551468..29551492 (25 bp)
GAACAGTGACTCTCTACAAGATGCT
LOC_Os04g49920
OsAffx.26670.2.S1_at--169--9331Chr04:29551386..29551410 (25 bp)
TCGCCTGCTGAGCTATCTGAAGTCA
LOC_Os04g49920
OsAffx.26670.2.S1_at--1089--2791Chr04:29551337..29551361 (25 bp)
AAGATGCTTCGTCTTCTGAGCTATC
LOC_Os04g49920
OsAffx.26670.2.S1_at--549--8111Chr04:29551279..29551303 (25 bp)
GGACGGATGTTCTTCATCTTCTGAG
LOC_Os04g49920
OsAffx.26670.2.S1_at--791--431Chr04:29551264..29551288 (25 bp)
ATCTTCTGAGTTTGTGATCCCTCCT
LOC_Os04g49920
OsAffx.26670.2.S1_at--480--1371Chr04:29551187..29551211 (25 bp)
AGACCGCAATTGGTTTGGCGCGTCT
LOC_Os04g49920
OsAffx.26670.2.S1_at--516--3831Chr04:29551157..29551181 (25 bp)
CTGCGCTACCTGACCATGGGATAAT
LOC_Os04g49920
OsAffx.26670.2.S1_at--324--811Chr04:29551134..29551158 (25 bp)
ATGGTACACCTCTCAACCAAGTGTG
LOC_Os04g49920
Target Sequence 
TGGTGTGCTTGCTGGGTCATCCAAAGAGACTAACAATGAGAGTGATAGTTCTTCACAAGACGCATCACCTGTTAAGCCAC
TCAATGACTGTAGCAGTGAGAATGATAAAGATGAGTATGACGGTTCTTTGCAGGATGCATCACCTAGTGAACCACCGAAT
GACAGTAACTGCGAGAGTGGTAAATATGAGAACAGTGACTCTCTACAAGATGCTTCACCCGCTGAGCTATCTGAAGTCTG
TTACAATGGAAATGGTTCTTTACAGGATGCTTCGCCTGCTGAGCTATCTGAAGTCAGTAACAATGGAAATGGTTCTTTAC
AAGATGCTTCGTCTTCTGAGCTATCTGAAGTCTGTAACAATGGAAATGGTCAGGATGAGGACGGATGTTCTTCATCTTCT
GAGTTTGTGATCCCTCCTGGATGGGCTCAAAGGGAGTACATAGCTTGGCGGGTCGAAGAGGAGGCAAATCAGACCGCAAT
TGGTTTGGCGCGTCTAGGCACTGCGCTACCTGACCATGGGATAATGGTACACCTCTCAACCAAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26670.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis