Browse Element(s) Details


OsAffx.26544.1.S1_at

Description tigr:9632.m04851
TID=OsAffx.26544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4995011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein
LOC_Os04g49930OsAffx.26670.1.S1_at11/114+29557342..29564508hypothetical protein
LOC_Os04g49930Os.10719.1.S1_at1/114+29557342..29564508hypothetical protein
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g50000NANA4+29599643..29603998retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26544.1.S1_at--420--2351Chr04:29572422..29572446 (25 bp)
AAAGCTTCCCCAGTGCCAGATGGCA
LOC_Os04g49950
OsAffx.26544.1.S1_at--212--6231Chr04:29572404..29572428 (25 bp)
GATGGCATTCCCCATGCTGTACGGG
LOC_Os04g49950
OsAffx.26544.1.S1_at--593--9971Chr04:29572292..29572316 (25 bp)
TACCAGCCGCAACACGTGGAGATCA
LOC_Os04g49950
OsAffx.26544.1.S1_at--438--3811Chr04:29572242..29572266 (25 bp)
CTCCTGCGTATTCCGGCCATGCGAG
LOC_Os04g49950
OsAffx.26544.1.S1_at--1149--7271Chr04:29572131..29572155 (25 bp)
GTGCGTCGAGCACACCGACGGCTTC
LOC_Os04g49950
OsAffx.26544.1.S1_at--678--4231Chr04:29572060..29572084 (25 bp)
CCGAGATGGCCGAGGATTTGCTGCT
LOC_Os04g49950
OsAffx.26544.1.S1_at--343--211Chr04:29572045..29572069 (25 bp)
ATTTGCTGCTGGGTTTGCCTCTCGA
LOC_Os04g49950
OsAffx.26544.1.S1_at--728--8631Chr04:29572036..29572060 (25 bp)
TGGGTTTGCCTCTCGAGCACCCGTG
LOC_Os04g49950
OsAffx.26544.1.S1_at--953--7451Chr04:29571935..29571959 (25 bp)
GTGTCGCTCAGGGATCTCGCGCGCA
LOC_Os04g49950
OsAffx.26544.1.S1_at--648--4151Chr04:29571901..29571925 (25 bp)
CGCGCCGTCTCATCGAGTGTGGGTA
LOC_Os04g49950
OsAffx.26544.1.S1_at--1104--7151Chr04:29571895..29571919 (25 bp)
GTCTCATCGAGTGTGGGTACAGGAT
LOC_Os04g49950
Target Sequence 
AAAGCTTCCCCAGTGCCAGATGGCATTCCCCATGCTGTACGGGGATAGCTTGGTGCCCATCCAGGACGACGAACCGCCCG
ACTACGTCGCGCCGACTCTTCGCGACGACGACGGCGGGCGGCGCTGCTACTACCAGCCGCAACACGTGGAGATCAGCGGC
GGCGAGCAGCCTGCGGCTGCCTCCTGCGTATTCCGGCCATGCGAGGCGGCCGGCGGCGGCTGCAGGGGCATGGGCTGCGT
GTACGCGGGTAGCTGCTGCAGGAGGGTGCTGTGCCGGGAGTGCAGCCTCCCGTGCGTCGAGCACACCGACGGCTTCCACA
CCGCGATACTGCCCTTCCTGCCGCGGCGCTCCGCGACGGCGACCGAGATGGCCGAGGATTTGCTGCTGGGTTTGCCTCTC
GAGCACCCGTGCGTGCCGGGGCCCGAGTACTGCTACTACTACTCGGAGGGGGACGAGGTGGAGGAAGGCGTGGGGCGGCA
CGTGTTCGTGTCGCTCAGGGATCTCGCGCGCACCAGGCAGCCGCGCCGTCTCATCGAGTGTGGGTACAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis