Browse Element(s) Details


Os.53025.1.S1_at

Description gb:AK070506.1
DB_XREF= gi:32980530
TID=Os.53025.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050H20, full insert sequence.
FL= gb:AK070506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4997011/11U-box domain containing protein, expressed
LOC_Os02g124101/11U-box domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g50000NANA4+29599643..29603998retrotransposon protein, putative, unclassified
LOC_Os04g50010NANA4+29604457..29604672hypothetical protein
LOC_Os04g50020OsAffx.4133.1.S1_at11/114+29608778..29609834heavy metal-associated domain containing protein, expressed
LOC_Os04g50030OsAffx.26545.1.S1_s_at11/114+29612152..29613524expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53025.1.S1_at--135--8871Chr04:29591313..29591337 (25 bp)
TGATGCAAGTGGAGAGCTCGCCGTC
LOC_Os04g49970
Os.53025.1.S1_at--1133--3332Chr04:29591372..29591396 (25 bp)
CACGGCGCGTTCTGGAGGCAGTACC
LOC_Os04g49970
Os.53025.1.S1_at--1019--6712Chr04:29591380..29591404 (25 bp)
GTTCTGGAGGCAGTACCCTTGCTTC
LOC_Os04g49970
Os.53025.1.S1_at--312--2271Chr04:29591429..29591453 (25 bp)
AAATCTCTCAACTGATCATCTTTCA
LOC_Os04g49970
Os.53025.1.S1_at--1099--411Chr04:29591443..29591467 (25 bp)
ATCATCTTTCAGAGTGATCAGTAAA
LOC_Os04g49970
Os.53025.1.S1_at--607--2351Chr04:29591533..29591557 (25 bp)
AAAGCAGGACATTCAGCATGGTATA
LOC_Os04g49970
Os.53025.1.S1_at--51--5011Chr04:29591548..29591572 (25 bp)
GCATGGTATATGCATCTGTGTTTGT
LOC_Os04g49970
Os.53025.1.S1_at--678--3892Chr04:29591563..29591587 (25 bp)
CTGTGTTTGTGTGTGGGCTGTCTAA
LOC_Os04g49970
Os.53025.1.S1_at--106--7491Chr04:29591575..29591599 (25 bp)
GTGGGCTGTCTAAAATCGCATGAAT
LOC_Os04g49970
Os.53025.1.S1_at--374--5212Chr04:29591596..29591620 (25 bp)
GAATTCTGCGTGATTTTCATAGAAA
LOC_Os04g49970
Os.53025.1.S1_at--313--2411Chr04:29591630..29591654 (25 bp)
AAACAATTCAAGTGCATTAGGAGAT
LOC_Os04g49970
Target Sequence 
TGATGCAAGTGGAGAGCTCGCCGTCGACCAAGGACAAGGCGGTGAAGATGCTGCGAGCGCACGGCGCGTTCTGGAGGCAG
TACCCTTGCTTCCCCACGGACCTCAAGGACTACCTCAAATCTCTCAACTGATCATCTTTCAGAGTGATCAGTAAAGTGAT
TTGTAAATTGTAAATTAAGAGAAATTGGATGTGTATTGTTTTGTAGGAATACAGGAGATTAAAGCAGGACATTCAGCATG
GTATATGCATCTGTGTTTGTGTGTGGGCTGTCTAAAATCGCATGAATTCTGCGTGATTTTCATAGAAATTTGAAATTAAA
CAATTCAAGTGCATTAGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis