Browse Element(s) Details


Os.10549.1.S1_at

Description gb:AK061833.1
DB_XREF= gi:32971851
TID=Os.10549.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D04, full insert sequence.
FL= gb:AK100053.1 gb:AK098964.1 gb:AK061833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4996011/11glycosyl transferase, group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49930OsAffx.26670.1.S1_at11/114+29557342..29564508hypothetical protein
LOC_Os04g49930Os.10719.1.S1_at1/114+29557342..29564508hypothetical protein
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g50000NANA4+29599643..29603998retrotransposon protein, putative, unclassified
LOC_Os04g50010NANA4+29604457..29604672hypothetical protein
LOC_Os04g50020OsAffx.4133.1.S1_at11/114+29608778..29609834heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10549.1.S1_at--302--9491Chr04:29586286..29586310 (25 bp)
TCTCCAACTGCCTTTGTGTGTTATA
LOC_Os04g49960
Os.10549.1.S1_at--653--191Chr04:29586406..29586430 (25 bp)
ATTTCGGTATTGTTCCTCTGGAAGC
LOC_Os04g49960
Os.10549.1.S1_at--733--1691Chr04:29586428..29586452 (25 bp)
AGCCATGGCCGCATATAAACCTGTA
LOC_Os04g49960
Os.10549.1.S1_at--165--5971Chr04:29586498..29586522 (25 bp)
GAGACAGGGTTTCTCTGTGAGCCCT
LOC_Os04g49960
Os.10549.1.S1_at--736--7551Chr04:29586602..29586626 (25 bp)
GGGCCATGTTGTGCAGAAGTTCTCA
LOC_Os04g49960
Os.10549.1.S1_at--882--3571Chr04:29586634..29586658 (25 bp)
CATTTGGTGACCTTCTGAACAGCTA
LOC_Os04g49960
Os.10549.1.S1_at--435--2151Chr04:29586652..29586676 (25 bp)
ACAGCTATGTCCTTAATGTGTACCA
LOC_Os04g49960
Os.10549.1.S1_at--906--8831Chr04:29586690..29586714 (25 bp)
TGATCCCCAATTCGGTGTCGGCAAT
LOC_Os04g49960
Os.10549.1.S1_at--369--10311Chr04:29586760..29586784 (25 bp)
TTTCTTTTGTTACTTCTGACTTCGA
LOC_Os04g49960
Os.10549.1.S1_at--1158--9471Chr04:29586774..29586798 (25 bp)
TCTGACTTCGATGTACACGCATGCG
LOC_Os04g49960
Os.10549.1.S1_at--743--3191Chr04:29586910..29586934 (25 bp)
CAATCTGATTGTCTTTCCCTGGAAA
LOC_Os04g49960
Target Sequence 
TCTCCAACTGCCTTTGTGTGTTATACACTCCAAAGGATGAACATTTCGGTATTGTTCCTCTGGAAGCCATGGCCGCATAT
AAACCTGTAATTGCATGCAACAGTGGTGGTCCAGTGGAAACAGTCATAAATGACGAGACAGGGTTTCTCTGTGAGCCCTC
TGCCCCTGAATTTTCAAAAGCCATGCTGAAGCTCGTGAACGATCACGATCTAGCAGTTAAGATGGGTAAACAAGCAAGGG
GCCATGTTGTGCAGAAGTTCTCAACCAAGACATTTGGTGACCTTCTGAACAGCTATGTCCTTAATGTGTACCATCAGAGG
ATTGAGTGATCCCCAATTCGGTGTCGGCAATGCCGTGGAACACTTGGAATAGACCATCATTTTCATGTTTTTTCCTTTTC
TTTTGTTACTTCTGACTTCGATGTACACGCATGCGATAGAGTATTATATACGGATGAATAGTGAAAACGACTTTGTAATG
TTACCATTTGTGGCAATGACAGGAAAAAATATATATTTGGGCCGTCTGAAACAGAGCTGAAGTTTACAATCTGATTGTCT
TTCCCTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis