Browse Element(s) Details


OsAffx.26670.1.S1_at

Description tigr:9632.m04849
TID=OsAffx.26670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY127047 sensitivity to red light reduced protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4993011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49900Os.20283.1.S1_at9/114+29535851..29543031ABC transporter family protein, expressed
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein
LOC_Os04g49930OsAffx.26670.1.S1_at11/114+29557342..29564508hypothetical protein
LOC_Os04g49930Os.10719.1.S1_at1/114+29557342..29564508hypothetical protein
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0042752biological_processregulation of circadian rhythm
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26670.1.S1_at--84--7311Chr04:29558081..29558105 (25 bp)
GTGCTCTCCTTCTTTATTGGTTCAT
LOC_Os04g49930
OsAffx.26670.1.S1_at--477--1891Chr04:29557935..29557959 (25 bp)
ACGTTGGTTCAACAGAGTCTCTCAC
LOC_Os04g49930
OsAffx.26670.1.S1_at--679--4571Chr04:29557898..29557922 (25 bp)
GCGCATGATTCATTCCTACGTAGTT
LOC_Os04g49930
OsAffx.26670.1.S1_at--1140--6931Chr04:29557879..29557903 (25 bp)
GTAGTTACTTGCACTTGACTTCGAT
LOC_Os04g49930
OsAffx.26670.1.S1_at--212--8951Chr04:29557864..29557888 (25 bp)
TGACTTCGATGCCATTGCCATGTGA
LOC_Os04g49930
OsAffx.26670.1.S1_at--1131--9171Chr04:29557833..29557857 (25 bp)
TGCCGTGCCTGCTGAGATATCCAAA
LOC_Os04g49930
OsAffx.26670.1.S1_at--942--6491Chr04:29557818..29557842 (25 bp)
GATATCCAAAGACCCTGACCATGAG
LOC_Os04g49930
OsAffx.26670.1.S1_at--710--6731Chr04:29557786..29557810 (25 bp)
GTTCTTCACATGATGCATCACCTAC
LOC_Os04g49930
OsAffx.26670.1.S1_at--1033--10851Chr04:29557564..29557588 (25 bp)
TTGGATTGGCACGTCTAGGCAGTAT
LOC_Os04g49930
OsAffx.26670.1.S1_at--821--10091Chr04:29557549..29557573 (25 bp)
TAGGCAGTATGCTACCTGACCATCA
LOC_Os04g49930
OsAffx.26670.1.S1_at--458--5291Chr04:29557464..29557488 (25 bp)
GAATGGCAGGCTACCAGACATCACA
LOC_Os04g49930
Target Sequence 
GTGCTCTCCTTCTTTATTGGTTCATTAGGTAACGTGGATCAAACCGTGGCTAGTATTGGAGCAATTGAACTTGGGCTAAA
GGTCATGCTTGAGTACCATGAACCAGTTAAAAAGCTGATCGTTGAGGGGGACGATCTCACGGTGATACGTTGGTTCAACA
GAGTCTCTCACCCGCCTGCAAGAGCGCATGATTCATTCCTACGTAGTTACTTGCACTTGACTTCGATGCCATTGCCATGT
GAGGGGGCTGCCGTGCCTGCTGAGATATCCAAAGACCCTGACCATGAGAATGGTAGTTCTTCACATGATGCATCACCTAC
TAAGCCACCGAATGACGGTAACATCGAGAATGATGCTTCACCTGCTAAGCAATTTGAAAGGGAGTACATAGCTTGGCGGG
TCGATGAAGAGGCTAATCAGGTCGCAATTGGATTGGCACGTCTAGGCAGTATGCTACCTGACCATCAGAATCGGGTAAAG
GTACACAGCTCAACCCAGTGTGACTGTGAAATCCAAAGAGAAATGAGGAATGGCAGGCTACCAGACATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis