Browse Element(s) Details


Os.21880.2.S1_x_at

Description gb:AK068571.1
DB_XREF= gi:32978588
TID=Os.21880.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156A17, full insert sequence.
FL= gb:AK068571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4994010/11ferredoxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein
LOC_Os04g49930OsAffx.26670.1.S1_at11/114+29557342..29564508hypothetical protein
LOC_Os04g49930Os.10719.1.S1_at1/114+29557342..29564508hypothetical protein
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21880.2.S1_x_at--340--1631Chr04:29568888..29568912 (25 bp)
AGCGTGCTCATATCGAGACCTTCAT
LOC_Os04g49940
Os.21880.2.S1_x_at--456--9411NONE
TCGTCCGCAGCGAGTCAAATATTAG
NONE
Os.21880.2.S1_x_at--881--5831Chr04:29569874..29569898 (25 bp)
GACCAAAAAGGCCTGATCCTCCATG
LOC_Os04g49940
Os.21880.2.S1_x_at--613--1231Chr04:29569926..29569950 (25 bp)
AGATTGCCGCAACTGTTTTGGTCGA
LOC_Os04g49940
Os.21880.2.S1_x_at--634--5971Chr04:29570043..29570067 (25 bp)
GAGAACCAATCATGCCGATCTTGTC
LOC_Os04g49940
Os.21880.2.S1_x_at--1002--391Chr04:29570060..29570084 (25 bp)
ATCTTGTCATGCTCCCGAAGGGCGA
LOC_Os04g49940
Os.21880.2.S1_x_at--976--871Chr04:29570085..29570206 (25 bp)
ATGGCCACAATGGTGCCGTATATGT
LOC_Os04g49940
Os.21880.2.S1_x_at--1146--1611Chr04:29570213..29570237 (25 bp)
AGCGGGTTAGATTACTGCCACCGTT
LOC_Os04g49940
Os.21880.2.S1_x_at--518--7351Chr04:29570250..29570274 (25 bp)
GTGAATTTCGAGAACCCATGGGCTT
LOC_Os04g49940
Os.21880.2.S1_x_at--74--171Chr04:29570425..29570449 (25 bp)
ATTTTAGTTTATCGCAATGCTCGTG
LOC_Os04g49940
Os.21880.2.S1_x_at--1060--3011Chr04:29570440..29570464 (25 bp)
AATGCTCGTGTTATGGAATCCGGAC
LOC_Os04g49940
Target Sequence 
AGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCC
TCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATC
TTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGC
CATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTG
TTGTATGGTTGACAGTCCGACAGATCTGTGTAGANAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACT
ACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21880.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis