Browse Element(s) Details


Os.11431.2.S1_at

Description gb:AK108394.1
DB_XREF= gi:32993603
TID=Os.11431.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, contig of clone: OsAHP1SE2 and 23C4BG007
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F08, full insert sequence.
FL= gb:AK108394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4999011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g50000NANA4+29599643..29603998retrotransposon protein, putative, unclassified
LOC_Os04g50010NANA4+29604457..29604672hypothetical protein
LOC_Os04g50020OsAffx.4133.1.S1_at11/114+29608778..29609834heavy metal-associated domain containing protein, expressed
LOC_Os04g50030OsAffx.26545.1.S1_s_at11/114+29612152..29613524expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11431.2.S1_at--95--3691Chr04:29598217..29598241 (25 bp)
CTTTGGGTAAGCCTGCATCATTTCT
LOC_Os04g49990
Os.11431.2.S1_at--949--3551Chr04:29598202..29598226 (25 bp)
CATCATTTCTCTGCTTTGGGTTTAT
LOC_Os04g49990
Os.11431.2.S1_at--194--10851Chr04:29598187..29598211 (25 bp)
TTGGGTTTATATCTGAACTCTGAAA
LOC_Os04g49990
Os.11431.2.S1_at--39--1131Chr04:29598138..29598162 (25 bp)
AGTGCAATGTTGCTTGGCCTGTAGC
LOC_Os04g49990
Os.11431.2.S1_at--481--6631Chr04:29598130..29598154 (25 bp)
GTTGCTTGGCCTGTAGCTTTGGAAA
LOC_Os04g49990
Os.11431.2.S1_at--499--10111Chr04:29598103..29598127 (25 bp)
TATGGTCCAAGCTTGTGGCGGGTAT
LOC_Os04g49990
Os.11431.2.S1_at--880--5211Chr04:29598057..29598081 (25 bp)
GAATTAATTCATGTGTTTGCTTGTG
LOC_Os04g49990
Os.11431.2.S1_at--665--10491Chr04:29597999..29598023 (25 bp)
TTAAGGATCCCTCATCATTCTGAAG
LOC_Os04g49990
Os.11431.2.S1_at--81--5511Chr04:29597927..29597951 (25 bp)
GAAAAGTACAAGCACTCTTTATCCT
LOC_Os04g49990
Os.11431.2.S1_at--975--9551Chr04:29597912..29597936 (25 bp)
TCTTTATCCTTTCCTGGTGTTGCAC
LOC_Os04g49990
Os.11431.2.S1_at--829--8611Chr04:29597898..29597922 (25 bp)
TGGTGTTGCACTGGGCACAGTCTAA
LOC_Os04g49990
Target Sequence 
CTTTGGGTAAGCCTGCATCATTTCTCTGCTTTGGGTTTATATCTGAACTCTGAAATGATATGGCTTAATATGACTGAAAA
GTGCAATGTTGCTTGGCCTGTAGCTTTGGAAAAATATGGTCCAAGCTTGTGGCGGGTATGGAGTGTGATTGTTGGAAATG
GAATTAATTCATGTGTTTGCTTGTGTGCATTAAAAAGGGCATGTGTGGAATAATTTTTTTAAGGATCCCTCATCATTCTG
AAGGAATAAAAATATGGCAGAATAGTGCAGGCAGAGATTTGAATAATAAAGAAAAGTACAAGCACTCTTTATCCTTTCCT
GGTGTTGCACTGGGCACAGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11431.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis