Browse Element(s) Details


Os.6618.1.S1_at

Description gb:AK063682.1
DB_XREF= gi:32973700
TID=Os.6618.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E08, full insert sequence.
FL= gb:AK063682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4998011/11Late embryogenesis abundant group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49940Os.21880.1.S1_at11/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49940Os.21880.2.S1_x_at10/114+29568743..29570530ferredoxin, putative, expressed
LOC_Os04g49950OsAffx.26544.1.S1_at11/114+29571846..29577921F-box domain containing protein, expressed
LOC_Os04g49960Os.10549.1.S1_at11/114+29583969..29586948glycosyl transferase, group 1 family protein, expressed
LOC_Os04g49970Os.53025.1.S1_at11/114+29590137..29591723U-box domain containing protein, expressed
LOC_Os04g49980Os.6618.1.S1_at11/114+29592878..29593643Late embryogenesis abundant group 1 family protein, expressed
LOC_Os04g49990Os.11431.1.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g49990Os.11431.2.S1_at11/114+29594959..29599053AT hook motif family protein, expressed
LOC_Os04g50000NANA4+29599643..29603998retrotransposon protein, putative, unclassified
LOC_Os04g50010NANA4+29604457..29604672hypothetical protein
LOC_Os04g50020OsAffx.4133.1.S1_at11/114+29608778..29609834heavy metal-associated domain containing protein, expressed
LOC_Os04g50030OsAffx.26545.1.S1_s_at11/114+29612152..29613524expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6618.1.S1_at--320--8371Chr04:29593327..29593351 (25 bp)
GGCGTCCGACAAATCGTACATCTAG
LOC_Os04g49980
Os.6618.1.S1_at--707--4051Chr04:29593384..29593408 (25 bp)
CGATCTGGATCGCTAGTGTGTTTTT
LOC_Os04g49980
Os.6618.1.S1_at--527--1111Chr04:29593413..29593437 (25 bp)
AGTGTAGCGAGTGATCTGGTCCCAG
LOC_Os04g49980
Os.6618.1.S1_at--108--4531Chr04:29593442..29593466 (25 bp)
GCCGCTGATCGTGTTAGCTTGTGTT
LOC_Os04g49980
Os.6618.1.S1_at--373--1551Chr04:29593457..29593481 (25 bp)
AGCTTGTGTTCGTACGCACGCGTGT
LOC_Os04g49980
Os.6618.1.S1_at--795--3351Chr04:29593473..29593497 (25 bp)
CACGCGTGTATGCTGTGTGCACATG
LOC_Os04g49980
Os.6618.1.S1_at--643--3891Chr04:29593485..29593509 (25 bp)
CTGTGTGCACATGCGTGTGCTGGAA
LOC_Os04g49980
Os.6618.1.S1_at--399--2111Chr04:29593534..29593558 (25 bp)
ACATGCTTGATGTAGTTCTGTTCAA
LOC_Os04g49980
Os.6618.1.S1_at--636--5571Chr04:29593560..29593584 (25 bp)
GAAAGGGCTTTCGTTTTCATGTGTT
LOC_Os04g49980
Os.6618.1.S1_at--529--7431Chr04:29593580..29593604 (25 bp)
GTGTTTTTGAAGTACGCATCTACGG
LOC_Os04g49980
Os.6618.1.S1_at--158--4971Chr04:29593595..29593619 (25 bp)
GCATCTACGGATCTACTTATATCGA
LOC_Os04g49980
Target Sequence 
GGCGTCCGACAAATCGTACATCTAGATTTGGGGTAGATGGACATGGGCGGGCTTGATCGATCTGGATCGCTAGTGTGTTT
TTTTTCAGTGTAGCGAGTGATCTGGTCCCAGCCCGGCCGCTGATCGTGTTAGCTTGTGTTCGTACGCACGCGTGTATGCT
GTGTGCACATGCGTGTGCTGGAATAAAAAGTGTCAGTTGTAAAATTAACATGCTTGATGTAGTTCTGTTCAATGAAAGGG
CTTTCGTTTTCATGTGTTTTTGAAGTACGCATCTACGGATCTACTTATATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis