Browse Element(s) Details


OsAffx.29607.3.S1_x_at

Description tigr:9636.m03331
TID=OsAffx.29607.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3327011/11transposon protein, putative, unclassified
LOC_Os03g213309/11transposon protein, putative, unclassified
LOC_Os08g403108/11transposon protein, putative, unclassified
LOC_Os05g406706/11transposon protein, putative, unclassified
LOC_Os03g249701/11SWIM zinc finger family protein
LOC_Os04g308701/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33220NANA8+20577722..20579730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g33230OsAffx.22722.1.S1_x_at1/118+20580613..20581659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g33240NANA8+20582027..20582401retrotransposon protein, putative, unclassified
LOC_Os08g33250OsAffx.1647.1.S1_at1/118+20583209..20586101retrotransposon protein, putative, unclassified
LOC_Os08g33260OsAffx.29486.4.S1_at10/118+20587563..20589583hypothetical protein
LOC_Os08g33260OsAffx.29486.2.S1_x_at1/118+20587563..20589583hypothetical protein
LOC_Os08g33270OsAffx.29607.3.S1_x_at11/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.5.S1_x_at8/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.1.S1_x_at7/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33270OsAffx.29607.2.S1_s_at3/118+20595820..20602230transposon protein, putative, unclassified
LOC_Os08g33280NANA8+20602472..20608388Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os08g33290OsAffx.29487.1.S1_at11/118+20610596..20612662hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29607.3.S1_x_at--768--3034Chr08:20601559..20601583 (25 bp)
AATCCTGAGATTCAACATTTTGTCA
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--53--5531Chr08:20601616..20601640 (25 bp)
GAAAAGCTATGAAACTTTCCAGTTT
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--191--6353Chr08:20601698..20601722 (25 bp)
GATGCTGAGCAGGAGATCAATGATT
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--237--9733Chr08:20601714..20601738 (25 bp)
TCAATGATTCAGATCCAAATGCAGA
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--328--5054Chr08:20601734..20601758 (25 bp)
GCAGAAGACAATTTGAACTCACATG
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--853--3271Chr08:20601826..20601850 (25 bp)
CAAAGGCAGGCCAACTCAAAGATAC
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--434--255Chr08:20601886..20601910 (25 bp)
ATATCATTGCAGTCATTGTCAGAGG
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--417--10813Chr08:20601901..20601925 (25 bp)
TTGTCAGAGGACAGATCACACATTT
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--603--5654Chr08:20601910..20601934 (25 bp)
GACAGATCACACATTTCCAACGTGC
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--960--7274Chr08:20601931..20601955 (25 bp)
GTGCCCTCTGAAACACGTTGAGTTT
LOC_Os08g33270
OsAffx.29607.3.S1_x_at--619--2474Chr08:20601942..20601966 (25 bp)
AACACGTTGAGTTTGACTTGCCAAG
LOC_Os08g33270
Target Sequence 
AATCCTGAGATTCAACATTTTGTCAAGGAAAAGTGCAGAAATAGCATCAAATGGATCGAAAAGCTATGAAACTTTCCAGT
TTGTAGTGGAAGAGATGGACAAAATTGCTAAACAATTGGAATTATTGTGTTCAAATAAAGATGCTGAGCAGGAGATCAAT
GATTCAGATCCAAATGCAGAAGACAATTTGAACTCACATGAAAAAGGCAATCAACAATCTGAGGAAAATATAGATGAAAT
ATTGTTGGATCTAGATATTGCAAAATCCAAAGGCAGGCCAACTCAAAGATACAAGACAATCAGGGAAGAAATACAGCAAA
AAGAACTATATCATTGCAGTCATTGTCAGAGGACAGATCACACATTTCCAACGTGCCCTCTGAAACACGTTGAGTTTGAC
TTGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29607.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis