Browse Element(s) Details


OsAffx.29607.5.S1_x_at

Description tigr:9631.m02128
TID=OsAffx.29607.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2133011/11transposon protein, putative, unclassified
LOC_Os08g4031010/11transposon protein, putative, unclassified
LOC_Os05g406709/11transposon protein, putative, unclassified
LOC_Os08g332708/11transposon protein, putative, unclassified
LOC_Os04g308701/11transposon protein, putative, unclassified
LOC_Os03g249701/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21290NANA3+12155435..12161615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21300OsAffx.15723.1.S1_at1/113+12163430..12166387expressed protein
LOC_Os03g21310Os.56077.1.S1_x_at1/113+12169398..12177969Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os03g21320NANA3+12178858..12180320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21330OsAffx.29607.5.S1_x_at11/113+12182858..12184921transposon protein, putative, unclassified
LOC_Os03g21330OsAffx.29607.3.S1_x_at9/113+12182858..12184921transposon protein, putative, unclassified
LOC_Os03g21340OsAffx.20730.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.20733.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.1197.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.10020.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.9790.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21350NANA3+12188447..12192447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360Os.45173.1.S1_x_at5/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.29607.2.S1_s_at4/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.20877.1.S1_at1/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21370Os.19817.1.S1_at10/113+12198664..12202070expressed protein
LOC_Os03g21380Os.16401.1.S2_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21380Os.16401.1.S1_at11/113+12202754..12204929EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29607.5.S1_x_at--769--3034Chr08:20601559..20601583 (25 bp)
AATCCTGAGATTCAACATTTTGTCA
LOC_Os08g33270
OsAffx.29607.5.S1_x_at--376--653Chr08:25386444..25386468 (25 bp)
ATGAAACTTTCCAGTTTGCAGTGGA
LOC_Os08g40310
OsAffx.29607.5.S1_x_at--190--6353Chr08:20601698..20601722 (25 bp)
GATGCTGAGCAGGAGATCAATGATT
LOC_Os08g33270
OsAffx.29607.5.S1_x_at--238--9733Chr08:20601714..20601738 (25 bp)
TCAATGATTCAGATCCAAATGCAGA
LOC_Os08g33270
OsAffx.29607.5.S1_x_at--327--5054Chr08:20601734..20601758 (25 bp)
GCAGAAGACAATTTGAACTCACATG
LOC_Os08g33270
OsAffx.29607.5.S1_x_at--308--233Chr08:25386271..25386295 (25 bp)
ATATTGTTGGATCCAGATATTGCAA
LOC_Os08g40310
OsAffx.29607.5.S1_x_at--623--2273Chr08:25386247..25386271 (25 bp)
AAATCCAAAGGCAGGCCAGCTCAAA
LOC_Os08g40310
OsAffx.29607.5.S1_x_at--435--255Chr08:20601886..20601910 (25 bp)
ATATCATTGCAGTCATTGTCAGAGG
LOC_Os08g33270
OsAffx.29607.5.S1_x_at--604--5654Chr08:20601910..20601934 (25 bp)
GACAGATCACACATTTCCAACGTGC
LOC_Os08g33270
OsAffx.29607.5.S1_x_at--961--7274Chr08:20601931..20601955 (25 bp)
GTGCCCTCTGAAACACGTTGAGTTT
LOC_Os08g33270
OsAffx.29607.5.S1_x_at--618--2474Chr08:20601942..20601966 (25 bp)
AACACGTTGAGTTTGACTTGCCAAG
LOC_Os08g33270
Target Sequence 
AATCCTGAGATTCAACATTTTGTCAAGGAAAAGTGCAGAAATAGCATCAAATGGATCGAAAAGCAATGAAACTTTCCAGT
TTGCAGTGGAAGAGATGGACAAAATTGCTAAACAATTGGAATTAATGTGTTCAAATAAAGATGCTGAGCAGGAGATCAAT
GATTCAGATCCAAATGCAGAAGACAATTTGAACTCACATGAAAAAGGCAATCAACAATCTGAGGAAAATACAGAAGAAAT
ATTGTTGGATCCAGATATTGCAAAATCCAAAGGCAGGCCAGCTCAAAGATATAAGACAATCAGGGAAGAAATACAGCAAA
AAGAACTATATCATTGCAGTCATTGTCAGAGGACAGATCACACATTTCCAACGTGCCCTCTGAAACACGTTGAGTTTGAC
TTGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29607.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis