Browse Element(s) Details


OsAffx.29635.1.S1_at

Description tigr:9636.m04345
TID=OsAffx.29635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR type resistance gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4271011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42700Os.49225.1.S1_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700Os.49225.1.S2_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700OsAffx.10059.1.S1_at1/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42710OsAffx.29635.1.S1_at11/118+26884119..26894386NB-ARC domain containing protein
LOC_Os08g42720Os.5639.1.S1_at11/118+26894750..26899312anthocyanin-related membrane protein 1, putative, expressed
LOC_Os08g42730Os.14174.1.S1_at11/118+26902095..26905995Biotin synthase, putative, expressed
LOC_Os08g42740Os.14654.1.S1_at11/118+26914526..26922173ARI, RING finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29635.1.S1_at--525--631Chr08:26893834..26893858 (25 bp)
ATGCTTACAATCCTTATTACTTCGG
LOC_Os08g42710
OsAffx.29635.1.S1_at--979--2391Chr08:26893989..26894013 (25 bp)
AAAAATTGAGCCTTCGGAGCACGAA
LOC_Os08g42710
OsAffx.29635.1.S1_at--412--491Chr08:26894013..26894037 (25 bp)
ATCTGGAGGCGGATGCTACCATGCA
LOC_Os08g42710
OsAffx.29635.1.S1_at--167--9971Chr08:26894029..26894053 (25 bp)
TACCATGCAAGTGCTCGGAGGCCTA
LOC_Os08g42710
OsAffx.29635.1.S1_at--538--5671Chr08:26894063..26894087 (25 bp)
GACATTCTACGTCTCCAGGACAAGG
LOC_Os08g42710
OsAffx.29635.1.S1_at--58--1411Chr08:26894097..26894121 (25 bp)
AGAATGAACTACGTTTCCATCCCGA
LOC_Os08g42710
OsAffx.29635.1.S1_at--166--6851Chr08:26894109..26894133 (25 bp)
GTTTCCATCCCGATTGTTTCACAAA
LOC_Os08g42710
OsAffx.29635.1.S1_at--195--3871Chr08:26894135..26894159 (25 bp)
CTGAGGGCACTGGAGCTTATTTCGT
LOC_Os08g42710
OsAffx.29635.1.S1_at--571--5771Chr08:26894193..26894217 (25 bp)
GAGCGACCCCTAAACTTGAGGTGCT
LOC_Os08g42710
OsAffx.29635.1.S1_at--581--1391Chr08:26894242..26894266 (25 bp)
AGACGAAGCTGGGTTTCCTGGGATA
LOC_Os08g42710
OsAffx.29635.1.S1_at--1140--5311Chr08:26894288..26894312 (25 bp)
GAAGTTTCGCTCCAGGGTTACTACT
LOC_Os08g42710
Target Sequence 
ATGCTTACAATCCTTATTACTTCGGGCGGAGGGTAAGGATGGGTTAGAAGGTTGTTTGGATGGCTTGTCCCCCCCTCCAA
AAGACCTTGAGAGCCTCCAGTTGTATGGAAATCTGGTGAAATTACCCGAATGGGTTAAGGAGCTTGAAAATCTACAAAAA
TTGAGCCTTCGGAGCACGAATCTGGAGGCGGATGCTACCATGCAAGTGCTCGGAGGCCTACCAATGCTCGACATTCTACG
TCTCCAGGACAAGGCGTGCAAGGAGAATGAACTACGTTTCCATCCCGATTGTTTCACAAATCTGAGGGCACTGGAGCTTA
TTTCGTGGGGTAGCCTCAAATCAGTGATATTTGAAGAAGGAGCGACCCCTAAACTTGAGGTGCTACTGGTGGACCATTGT
TCGTCCATAGACGAAGCTGGGTTTCCTGGGATAGAAAATCTTGCAACACTGAAGGAAGTTTCGCTCCAGGGTTACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis