Browse Element(s) Details


OsAffx.29672.1.S1_at

Description tigr:9637.m00005
TID=OsAffx.29672.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0168010/11DNA repair protein RAD51 homolog 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g01650NANA9+466011..472046peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g01660NANA9+473421..474010hypothetical protein
LOC_Os09g01670OsAffx.29670.1.S1_at10/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01670Os.50619.1.S1_x_at1/119+475979..483575peptidyl-prolyl cis-trans isomerase, FKBP-type family protein
LOC_Os09g01680OsAffx.29672.1.S1_at10/119+484020..489807DNA repair protein RAD51 homolog 4, putative, expressed
LOC_Os09g01690Os.6544.1.S1_a_at11/119+489945..492982expressed protein
LOC_Os09g01700OsAffx.29673.1.S1_at11/119+493816..496572hypothetical protein
LOC_Os09g01720NANA9+505489..507451hypothetical protein
LOC_Os09g01730NANA9+513691..514140retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006281biological_processDNA repair
GO:0007126biological_processmeiosis
GO:0007131biological_processmeiotic recombination
GO:0009314biological_processresponse to radiation
GO:0003677molecular_functionDNA binding
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29672.1.S1_at--632--2471Chr09:488928..488948 (21 bp)
AACACAGGTCTGTCTTTGTTCTGCT
LOC_Os09g01680
OsAffx.29672.1.S1_at--692--8791Chr09:488912..488936 (25 bp)
TGTTCTGCTTCACATGTGGCAGCCA
LOC_Os09g01680
OsAffx.29672.1.S1_at--47--8571Chr09:488863..488887 (25 bp)
TGGATACTAGCAATTCCTTTTCCCC
LOC_Os09g01680
OsAffx.29672.1.S1_at--219--3711Chr09:488839..488863 (25 bp)
CTAGCCGCATTGCTCGAATAGTTGA
LOC_Os09g01680
OsAffx.29672.1.S1_at--860--91Chr09:488811..488835 (25 bp)
ATTCCCCATCTCTTTGGTCAGAGAG
LOC_Os09g01680
OsAffx.29672.1.S1_at--911--5051Chr09:488554..488578 (25 bp)
GCAGCATCATTTGTAAGTCAGTCTT
LOC_Os09g01680
OsAffx.29672.1.S1_at--141--271Chr09:488386..488410 (25 bp)
ATATGCTTGCTTATCATTGACTCAA
LOC_Os09g01680
OsAffx.29672.1.S1_at--782--9731Chr09:488365..488389 (25 bp)
TCAATATCGTCTATACTTGCTCCCA
LOC_Os09g01680
OsAffx.29672.1.S1_at--947--8191Chr09:487963..488355 (25 bp)
GGAAGTATCCACGAGGGCGATCGAT
LOC_Os09g01680
OsAffx.29672.1.S1_at--852--5911NONE
GAGCATAATCTATCTGTTCTGGTTA
NONE
OsAffx.29672.1.S1_at--684--771Chr09:486599..486623 (25 bp)
ATGTCCGCTTGGTGATATCTCGTGA
LOC_Os09g01680
Target Sequence 
AACACAGGTCTGTCTTTGTTCTGCTTCACATGTGGCAGCCAGGCAGTTGGGTGTTGTTATGTACTTGGATACTAGCAATT
CCTTTTCCCCTAGCCGCATTGCTCGAATAGTTGATGGATTCCCCATCTCTTTGGTCAGAGAGCCAAAGAATGTGCGACTC
GAGAGGGTCATGAGCAGCATCATTTGTAAGTCAGTCTTTGATATATTCGATTTGTTTGAAGTGCTACATCAACTTGAATT
GTCACTGAAGAGCAAGGTAAACAATGGGGGTAACAAGATATGCTTGCTTATCATTGACTCAATATCGTCTATACTTGCTC
CCATCAACGGTGGGAAGTATCCACGAGGGCGATCGATGATGATATCAGTGGCTATGATTCTAAAGAAGCTAGCATATGAG
CATAATCTATCTGTTCTGGTTACTAACCATATGGTTGCTGGGAATGGAGCTCCCAAGCCTGCTCTTGGTGAGAGCTGGAA
AACTGTTCCACATGTCCGCTTGGTGATATCTCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis