Browse Element(s) Details


OsAffx.29776.1.S1_x_at

Description tigr:9637.m00689
TID=OsAffx.29776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=photoreceptor-interacting protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0937011/11phototropic-responsive NPH3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein
LOC_Os09g09350Os.50394.1.S1_at3/119+5004304..5005287hypothetical protein
LOC_Os09g09360Os.52247.1.S1_at10/119+5005931..5019011expressed protein
LOC_Os09g09370Os.21811.1.S1_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09370OsAffx.29776.1.S1_x_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09380NANA9+5032798..5033265hypothetical protein
LOC_Os09g09390NANA9+5040642..5041948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09400NANA9+5046339..5050853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09410OsAffx.31107.1.S1_at11/119+5051240..5051806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29776.1.S1_x_at--500--7551Chr09:5021715..5021739 (25 bp)
GTGGCCAGGACGTTCGACGAGTACC
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--172--2831Chr09:5021652..5021676 (25 bp)
AAGTTCGTCGACCTCGCCGAGTGCT
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--1155--1811Chr09:5021589..5021612 (24 bp)
ACGCCATTGACACCTATCTCAAGGA
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--1143--10151Chr09:5021491..5021598 (25 bp)
TATCTCAAGGAGCACCCGGAGCTGA
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--707--4691Chr09:5021450..5021474 (25 bp)
GCGGCTATGCCGGATGATCGACTGC
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--516--7991Chr09:5021439..5021463 (25 bp)
GGATGATCGACTGCCGGAAGCTGTC
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--47--5011Chr09:5021399..5021423 (25 bp)
GCAGGCGATCTCCAACGACCGGATG
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--998--9551Chr09:5021349..5021373 (25 bp)
TCTTCGTCGAGCAGGAGAGGGCCAT
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--41--3551Chr09:5021276..5021300 (25 bp)
CATCGCAATGCTCGCCGCAAGAAAG
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--3--4751Chr09:5021221..5021245 (25 bp)
GCTGACCACAAGTCGGACGTGCACC
LOC_Os09g09370
OsAffx.29776.1.S1_x_at--200--691Chr09:5021149..5021173 (25 bp)
ATGACGAGGTCGCTCTCGGCGTCCA
LOC_Os09g09370
Target Sequence 
GTGGCCAGGACGTTCGACGAGTACCTCCGCGCCGTCGCGCTCCACGCCGACTTCCCCGTCGGCAAGTTCGTCGACCTCGC
CGAGTGCTTGCCGGACATCGCCCGCAACGACCACGACGGCCTCTACCACGCCATTGACACCTATCTCAAGGAGCACCCGG
AGCTGAGCAAGGCGGACAAGAAGCGGCTATGCCGGATGATCGACTGCCGGAAGCTGTCGCCGGACGTGCGGGCGCAGGCG
ATCTCCAACGACCGGATGCCGCTGCGCACCATCGTGCAGCTGCTCTTCGTCGAGCAGGAGAGGGCCATGGGCGGCGGCGG
CGCAAGCGGCAGCAACAGCGCCGTCGCGCCCGACGCCATCGCAATGCTCGCCGCAAGAAAGGAGAAGGAGGACGAGCCGC
CGGCGCCGGCCGCTGACCACAAGTCGGACGTGCACCGGCCACGCGGCGACCACGGCGAACGCGCCCGGGCGGACGGCGCG
GCGATGACGAGGTCGCTCTCGGCGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29776.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis