Browse Element(s) Details


OsAffx.29779.1.S1_at

Description tigr:9637.m00711
TID=OsAffx.29779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0956011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09520Os.27228.2.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09520Os.27228.1.S1_at11/119+5136902..5141308Hexose carrier protein HEX6, putative, expressed
LOC_Os09g09530OsAffx.17616.1.S1_at11/119+5142515..5144439hypothetical protein
LOC_Os09g09540Os.53786.1.S1_at10/119+5149258..5153230expressed protein
LOC_Os09g09550OsAffx.6218.1.S1_at11/119+5155336..5157006hypothetical protein
LOC_Os09g09560OsAffx.29779.1.S1_at11/119+5158460..5160957hypothetical protein
LOC_Os09g09570OsAffx.17617.1.S1_at11/119+5162478..5163879expressed protein
LOC_Os09g09580NANA9+5166148..5168064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09590NANA9+5172915..5173313hypothetical protein
LOC_Os09g09600OsAffx.29780.1.S1_at9/119+5175165..5178300hypothetical protein
LOC_Os09g09610OsAffx.29781.1.S1_at11/119+5181571..5182636hypothetical protein
LOC_Os09g09619OsAffx.9066.1.S1_x_at1/119+5185168..5186329NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29779.1.S1_at--301--3371Chr09:5159165..5159189 (25 bp)
CAGCGGCCCAGTATTCCTAGAAATA
LOC_Os09g09560
OsAffx.29779.1.S1_at--372--971Chr09:5159189..5159213 (25 bp)
AGGAGCCGGCTATCTAGATCATCCA
LOC_Os09g09560
OsAffx.29779.1.S1_at--294--4411Chr09:5159311..5159335 (25 bp)
GCCACCAACTGATGAATTCACCTCA
LOC_Os09g09560
OsAffx.29779.1.S1_at--74--5751Chr09:5159351..5159375 (25 bp)
GACGGAGGTGTTCCCTCACTAACAA
LOC_Os09g09560
OsAffx.29779.1.S1_at--589--9251Chr09:5159377..5159401 (25 bp)
TCCTCACACCCGTGGTTTGAAGTAT
LOC_Os09g09560
OsAffx.29779.1.S1_at--922--2251Chr09:5159411..5159435 (25 bp)
AAATACCTTTTCTTGATGTCTTCCA
LOC_Os09g09560
OsAffx.29779.1.S1_at--977--3031Chr09:5159444..5159468 (25 bp)
AATCCCGCCGGAGAGCAGATGGTCT
LOC_Os09g09560
OsAffx.29779.1.S1_at--831--1311Chr09:5159460..5159484 (25 bp)
AGATGGTCTGCAATCCTGCGGACAA
LOC_Os09g09560
OsAffx.29779.1.S1_at--1149--6491Chr09:5160796..5160820 (25 bp)
GATATGGTCATCGAAGCAGCAGGTA
LOC_Os09g09560
OsAffx.29779.1.S1_at--132--1071Chr09:5160827..5160851 (25 bp)
AGGGACACACTGCAAGCTCAAATGT
LOC_Os09g09560
OsAffx.29779.1.S1_at--514--5591Chr09:5160853..5160877 (25 bp)
GAAATCGAGTGCACACCGCAGATCA
LOC_Os09g09560
Target Sequence 
CAGCGGCCCAGTATTCCTAGAAATAGGAGCCGGCTATCTAGATCATCCACAGTCAACCGCGACGATGGCGGTGGCTCGGT
GGGGTCCTCGTCGTCGGCCGGCAGTGGCATATCACCGCCGCTGCCGCCATCGGAGGTTGCAGCCGCGCCACCAACTGATG
AATTCACCTCAGGAATGGGTGTTGACGACGGAGGTGTTCCCTCACTAACAACTCCTCACACCCGTGGTTTGAAGTATTAT
TTCCAAAAATACCTTTTCTTGATGTCTTCCAAAAAGAAGAATCCCGCCGGAGAGCAGATGGTCTGCAATCCTGCGGACAA
TATGGAAGCTGACGCTCAAAGCGGTCCGCAGCCGGTGACATCATCTCCACCGCACACTTCCCAGGAAGATATGGTCATCG
AAGCAGCAGGTAGCAACCAGGGACACACTGCAAGCTCAAATGTGGAAATCGAGTGCACACCGCAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis