Browse Element(s) Details


OsAffx.29784.1.S1_at

Description tigr:9637.m00744
TID=OsAffx.29784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0985010/11heavy metal-associated domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09820Os.54271.1.S1_at11/119+5319875..5322838expressed protein
LOC_Os09g09830Os.13980.1.S1_at11/119+5326518..5327817heavy metal-associated domain containing protein, expressed
LOC_Os09g09839NANA9+5331062..5331351NA
LOC_Os09g09850OsAffx.29784.1.S1_at10/119+5347275..5350915heavy metal-associated domain containing protein
LOC_Os09g09850OsAffx.26987.1.S1_at1/119+5347275..5350915heavy metal-associated domain containing protein
LOC_Os09g09860NANA9+5354577..5357536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09870Os.10703.2.S1_x_at1/119+5357853..5364177retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09880Os.26886.3.S1_x_at5/119+5372270..5374477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09890NANA9+5375584..5376696transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29784.1.S1_at--537--8211Chr09:5349816..5349840 (25 bp)
GGAATCTTGTCCATCACGGCTGATA
LOC_Os09g09850
OsAffx.29784.1.S1_at--345--5291Chr09:5349755..5349779 (25 bp)
GAATGGATGTCACGGATCTGACCAC
LOC_Os09g09850
OsAffx.29784.1.S1_at--322--1931Chr09:5349744..5349768 (25 bp)
ACGGATCTGACCACAGTGCTTAGGA
LOC_Os09g09850
OsAffx.29784.1.S1_at--388--5351Chr09:5349718..5349742 (25 bp)
GAAGATGCCGCATACCTATATCATT
LOC_Os09g09850
OsAffx.29784.1.S1_at--339--531Chr09:5349693..5349717 (25 bp)
ATCGACACGGTCACTCAGGTTGATG
LOC_Os09g09850
OsAffx.29784.1.S1_at--1161--6071Chr09:5349624..5349648 (25 bp)
GAGTGCAAAAATCTTTGGCCCAATA
LOC_Os09g09850
OsAffx.29784.1.S1_at--985--8391Chr09:5349608..5349632 (25 bp)
GGCCCAATATTATTTATCCGCCATA
LOC_Os09g09850
OsAffx.29784.1.S1_at--1026--4431Chr09:5349589..5349613 (25 bp)
GCCATATCAATATCCTCCATACATG
LOC_Os09g09850
OsAffx.29784.1.S1_at--506--3811Chr09:5349575..5349599 (25 bp)
CTCCATACATGGTCGAATCATCAGG
LOC_Os09g09850
OsAffx.29784.1.S1_at--136--3731Chr09:5348677..5348701 (25 bp)
CTCAACCCGGATTCAAAAATGCCTG
LOC_Os09g09850
OsAffx.29784.1.S1_at--215--2451NONE
AAAATGCCTGCCGAGGTTCTTCACT
NONE
Target Sequence 
GGAATCTTGTCCATCACGGCTGATATGGAGAAAGGTAAGGTTACAGTGGTGGGTAATGATAGAATGGATGTCACGGATCT
GACCACAGTGCTTAGGAAGAAGATGCCGCATACCTATATCATTATCGACACGGTCACTCAGGTTGATGAGAAGAAGGAGA
AGGAGGAGAAGGATAGGAAGAAGATGGAAGAAGAGTGCAAAAATCTTTGGCCCAATATTATTTATCCGCCATATCAATAT
CCTCCATACATGGTCGAATCATCAGGGGCTGCCCACATCTCAACCCGGATTCAAAAATGCCTGCCGAGGTTCTTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis