Browse Element(s) Details


Os.13980.1.S1_at

Description gb:AK100058.1
DB_XREF= gi:32985267
TID=Os.13980.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158E12, full insert sequence.
FL= gb:AK100058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0983011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09780NANA9+5298688..5301967retrotransposon protein, putative, unclassified
LOC_Os09g09790Os.26844.1.S1_at11/119+5306474..5308044Fe-S metabolism associated domain containing protein, expressed
LOC_Os09g09800NANA9+5312449..5315317retrotransposon protein, putative, unclassified
LOC_Os09g09810Os.27215.1.A1_at1/119+5315711..5320269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09820Os.54271.1.S1_at11/119+5319875..5322838expressed protein
LOC_Os09g09830Os.13980.1.S1_at11/119+5326518..5327817heavy metal-associated domain containing protein, expressed
LOC_Os09g09839NANA9+5331062..5331351NA
LOC_Os09g09850OsAffx.29784.1.S1_at10/119+5347275..5350915heavy metal-associated domain containing protein
LOC_Os09g09850OsAffx.26987.1.S1_at1/119+5347275..5350915heavy metal-associated domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13980.1.S1_at--311--2491Chr09:5326997..5327021 (25 bp)
AACAGATGCGGCGTACTCACATTGT
LOC_Os09g09830
Os.13980.1.S1_at--1037--4691Chr09:5326990..5327014 (25 bp)
GCGGCGTACTCACATTGTCATTGAC
LOC_Os09g09830
Os.13980.1.S1_at--354--10771Chr09:5326976..5327000 (25 bp)
TTGTCATTGACACGGTCACACCGGT
LOC_Os09g09830
Os.13980.1.S1_at--619--531Chr09:5326844..5326868 (25 bp)
ATCCCAAGATTGTTTGTACGCCGTA
LOC_Os09g09830
Os.13980.1.S1_at--167--1831Chr09:5326827..5326851 (25 bp)
ACGCCGTACTATGTGCACATGGTGG
LOC_Os09g09830
Os.13980.1.S1_at--987--10091Chr09:5326818..5326842 (25 bp)
TATGTGCACATGGTGGACGAGCCCA
LOC_Os09g09830
Os.13980.1.S1_at--543--8531Chr09:5326805..5326829 (25 bp)
TGGACGAGCCCAGTCCATCATGCTG
LOC_Os09g09830
Os.13980.1.S1_at--1016--411Chr09:5326789..5326813 (25 bp)
ATCATGCTGCCAGATGTAGCTATAT
LOC_Os09g09830
Os.13980.1.S1_at--965--5331Chr09:5326726..5326750 (25 bp)
GAAGATTTATTATCAGCCATTTGCT
LOC_Os09g09830
Os.13980.1.S1_at--365--10391Chr09:5326645..5326669 (25 bp)
TTTTCCTTATTCTTCTACAACGCAA
LOC_Os09g09830
Os.13980.1.S1_at--1042--6811Chr09:5326576..5326600 (25 bp)
GTTTTTGCTACTCCCTACATATGGA
LOC_Os09g09830
Target Sequence 
AACAGATGCGGCGTACTCACATTGTCATTGACACGGTCACACCGGTTGATGAGAAGAAGGAAAAGGAGGAGAAGGAAAAG
AAGGAGAAAGAGGAGAAGGAGAAGAAAGAGAAAGAGGAGAAGGAGAAGAAGAAGAAGGAAGAAGAGCAAAACAATCCCAA
GATTGTTTGTACGCCGTACTATGTGCACATGGTGGACGAGCCCAGTCCATCATGCTGCCAGATGTAGCTATATTGTATGA
AATCACTATGNGTGTGTTGTGGAGAATTTTGGAAGATTTATTATCAGCCATTTGCTGCAAATTGATACATGTATAGTTAA
TGAGTTCAAATAACTTTAGTTTTCTGTTTTGTTTTTCCTTATTCTTCTACAACGCAAGTATGAAGAACTGAATTGTACTT
AAATTGGGTAGGAAACTGGTGGTTTTTGCTACTCCCTACATATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis