Browse Element(s) Details


Os.27215.1.A1_at

Description gb:AK061057.1
DB_XREF= gi:32971075
TID=Os.27215.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H07, full insert sequence.
FL= gb:AK061057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1736011/11expressed protein
LOC_Os09g098101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17290Os.47463.1.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.14491.2.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17300OsAffx.29890.1.S1_at11/119+10600276..10600518hypothetical protein
LOC_Os09g17329Os.27811.1.S1_at11/119+10604005..10620832expressed protein
LOC_Os09g17329Os.53075.1.S1_at2/119+10604005..10620832expressed protein
LOC_Os09g17360Os.27215.1.A1_at11/119+10623826..10625730expressed protein
LOC_Os09g17360Os.27215.1.A2_at11/119+10623826..10625730expressed protein
LOC_Os09g17370Os.47130.4.A1_x_at2/119+10628388..10629227retrotransposon protein, putative, unclassified, expressed
LOC_Os09g17380Os.28943.1.S1_x_at4/119+10630201..10633329retrotransposon protein, putative, unclassified
LOC_Os09g17390NANA9+10633949..10638282retrotransposon protein, putative, unclassified
LOC_Os09g17400NANA9+10640535..10645197retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17410NANA9+10647364..10654032retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27215.1.A1_at--899--9835Chr06:1170015..1170045 (25 bp)
TAAAGATCATCTAGACTCTCGGTTG
NONE
Os.27215.1.A1_at--472--6436Chr06:1170019..1170049 (25 bp)
GATCATCTAGACTCTCGGTTGGTAT
NONE
Os.27215.1.A1_at--728--9538Chr06:6544629..6544648 (20 bp)
TCTAGACTCTCGGTTGGTATTACCA
NONE
Os.27215.1.A1_at--352--2354Chr09:15966852..15966874 (23 bp)
AAACGCGTAATATATAATCCCTATC
NONE
Os.27215.1.A1_at--407--4653Chr12:9582001..9582020 (20 bp)
GCGTAATATATAATCCCTATCACTT
NONE
Os.27215.1.A1_at--995--9511Chr09:10625232..10625256 (25 bp)
TCTACAATCGCAACTCACACAGATC
LOC_Os09g17360
Os.27215.1.A1_at--302--3053Chr07:23318335..23318359 (25 bp)
AATCGCAACTCACACAGATCAAATC
NONE
Os.27215.1.A1_at--673--10312Chr09:10625034..10625058 (25 bp)
TTTATATAATCTGTGATTCACTAAG
LOC_Os09g17360
Os.27215.1.A1_at--422--9831Chr09:10625004..10625028 (25 bp)
TAAATTTGTGATTCAATGCATGGAT
LOC_Os09g17360
Os.27215.1.A1_at--1064--65314Chr12:26173380..26173429 (25 bp)
GATTTATGATGTAGATTTGGGATGT
NONE
Os.27215.1.A1_at--153--736Chr02:7475696..7475718 (23 bp)
ATGATTTAGGGATATGCATGCCACT
NONE
Target Sequence 
TAAAGATCATCTAGACTCTCGGTTGGTATTACCAACCAGAACTAAAATTAAACGCGTAATATATAATCCCTATCACTTAT
CCTCTCCTCTACAATCGCAACTCACACAGATCAAATCTCTCCCCCTCTTCCCTTTCCTCCTCCTCTCCTCTCCTACAGTC
TATCCTCTCTTCCTCATCCCCTCTCCTCCACCTCCTGCCCTTCCTCCTCTCCTCCCCCTCCTCCCCTTCCCATCCGGCGG
GCCGGCGGCCGTGGCGAGCAGTGGCAGCGGCTTTGTTTGTCTTTTTTTATATAATCTGTGATTCACTAAGATGTTTAAAT
TTGTGATTCAATGCATGGATCTGAGATGTATAATCTGTAATGTATTTGATTTGTGTGTAATTTTTTAGGATTTGTGATGT
ATTTGATTTTTGTGTATAAGTAACTTTAAGATTTATGATGTAGATTTGGGATGTTACATTGATTTGGGGATTTAGGGTTT
GATTTGATTTGGGGATTTGGGGTATGATTTAGGGATATGCATGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27215.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis