Browse Element(s) Details


Os.27811.1.S1_at

Description gb:CB666732
DB_XREF= gi:29670457
DB_XREF=OSJNEd13L22.r
CLONE=OSJNEd13L22
TID=Os.27811.1
CNT=36
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.27811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001D17, full insert sequence
FL= gb:AK064806.1 gb:AK064994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1732911/11expressed protein
LOC_Os09g171201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17250Os.53142.1.S1_at3/119+10577655..10580546retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17260NANA9+10582307..10582840hypothetical protein
LOC_Os09g17270OsAffx.29889.1.S1_at10/119+10583691..10587885hypothetical protein
LOC_Os09g17270Os.426.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.16944.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17270OsAffx.25360.1.S1_at1/119+10583691..10587885hypothetical protein
LOC_Os09g17280NANA9+10589466..10592798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.47463.1.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.14491.2.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17300OsAffx.29890.1.S1_at11/119+10600276..10600518hypothetical protein
LOC_Os09g17329Os.27811.1.S1_at11/119+10604005..10620832expressed protein
LOC_Os09g17329Os.53075.1.S1_at2/119+10604005..10620832expressed protein
LOC_Os09g17360Os.27215.1.A1_at11/119+10623826..10625730expressed protein
LOC_Os09g17360Os.27215.1.A2_at11/119+10623826..10625730expressed protein
LOC_Os09g17370Os.47130.4.A1_x_at2/119+10628388..10629227retrotransposon protein, putative, unclassified, expressed
LOC_Os09g17380Os.28943.1.S1_x_at4/119+10630201..10633329retrotransposon protein, putative, unclassified
LOC_Os09g17390NANA9+10633949..10638282retrotransposon protein, putative, unclassified
LOC_Os09g17400NANA9+10640535..10645197retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27811.1.S1_at--705--8231Chr09:10604614..10604638 (25 bp)
GGCACTTTAACATATCTCTACTCCT
LOC_Os09g17329
Os.27811.1.S1_at--563--4272Chr09:10604592..10604616 (25 bp)
CCTGGCCTTCAGTTCAGTGACAAGT
LOC_Os09g17329
Os.27811.1.S1_at--106--2231Chr09:10604573..10604597 (25 bp)
ACAAGTTTGGGTACTGCCTTTGCAC
LOC_Os09g17329
Os.27811.1.S1_at--173--7851Chr09:10604546..10604570 (25 bp)
GGTATGTATTTAGTGCTGGCCCCAG
LOC_Os09g17329
Os.27811.1.S1_at--352--2951Chr09:10604447..10604471 (25 bp)
AATGGCGTTCGTTTTGCAATAGCAC
LOC_Os09g17329
Os.27811.1.S1_at--755--5432Chr09:10604365..10604389 (25 bp)
GAACGCTAATTACATATTGGCCCTG
LOC_Os09g17329
Os.27811.1.S1_at--703--11Chr09:10604350..10604374 (25 bp)
ATTGGCCCTGTGTGATAATCTTTGG
LOC_Os09g17329
Os.27811.1.S1_at--426--10451Chr09:10604272..10604296 (25 bp)
TTAGATGCACCCGACCAGAGAGACA
LOC_Os09g17329
Os.27811.1.S1_at--781--10411Chr09:10604185..10604209 (25 bp)
TTATTCACGTGATATCTCTCCAGAA
LOC_Os09g17329
Os.27811.1.S1_at--995--10111Chr09:10604139..10604163 (25 bp)
TATGTAGCTACATGCTGTGCTCAGC
LOC_Os09g17329
Os.27811.1.S1_at--904--9611Chr09:10604072..10604096 (25 bp)
TCAGACCCTGTTAATTTCCTTTTAT
LOC_Os09g17329
Target Sequence 
GGCACTTTAACATATCTCTACTCCTGGCCTTCAGTTCAGTGACAAGTTTGGGTACTGCCTTTGCACTAGGTATGTATTTA
GTGCTGGCCCCAGTGACTCGATGCACTGCAATTGCAATCTGTGCAATGATGATGATTGCATCACTGTGCTTATATACGGA
GCCTTTAAATGGCGTTCGTTTTGCAATAGCACTATATGTTAGGAGGGGCAATCGGGTATTGCTAGTTATTGCACAGATTC
TACTTATTCGAACGCTAATTACATATTGGCCCTGTGTGATAATCTTTGGCTGGGCAGCGATTTCAACAAAAGATGGGCAC
ACAAGACATGGATGAGTCGTCATTAGATGCACCCGACCAGAGAGACAGAGAGATGACCAAAAGTATGTAGTAAGTTTGAA
ATTTAATCTATATTTGTAGTTGCCAATCATTATTCACGTGATATCTCTCCAGAATTAATATTTGATTCGAAAAAATATGT
AGCTACATGCTGTGCTCAGCTCAGATATTGTAATTTCTTTTTGTTATTTCTATTTTTAACATTCAGACCCTGTTAATTTC
CTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis