Browse Element(s) Details


Os.27215.1.A2_at

Description gb:CB660621
DB_XREF= gi:29664346
DB_XREF=OSJNEd02J10.r
CLONE=OSJNEd02J10
TID=Os.27215.1
CNT=4
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.27215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-H07, full insert sequence
FL= gb:AK061057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1736011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17290Os.47463.1.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17290Os.14491.2.S1_x_at5/119+10595913..10599610transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g17300OsAffx.29890.1.S1_at11/119+10600276..10600518hypothetical protein
LOC_Os09g17329Os.27811.1.S1_at11/119+10604005..10620832expressed protein
LOC_Os09g17329Os.53075.1.S1_at2/119+10604005..10620832expressed protein
LOC_Os09g17360Os.27215.1.A1_at11/119+10623826..10625730expressed protein
LOC_Os09g17360Os.27215.1.A2_at11/119+10623826..10625730expressed protein
LOC_Os09g17370Os.47130.4.A1_x_at2/119+10628388..10629227retrotransposon protein, putative, unclassified, expressed
LOC_Os09g17380Os.28943.1.S1_x_at4/119+10630201..10633329retrotransposon protein, putative, unclassified
LOC_Os09g17390NANA9+10633949..10638282retrotransposon protein, putative, unclassified
LOC_Os09g17400NANA9+10640535..10645197retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g17410NANA9+10647364..10654032retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27215.1.A2_at--215--2331Chr09:10624315..10624339 (25 bp)
AAAGTTCAAAATCGCGTGTTGCCGC
LOC_Os09g17360
Os.27215.1.A2_at--999--7411Chr09:10624300..10624324 (25 bp)
GTGTTGCCGCACGACTTGCGCGAGA
LOC_Os09g17360
Os.27215.1.A2_at--809--3891Chr09:10624252..10624276 (25 bp)
CTGTGTGCAAGACCGGACTTCGCTT
LOC_Os09g17360
Os.27215.1.A2_at--20--10631Chr09:10624234..10624258 (25 bp)
TTCGCTTCCCTAACCTTTGATTAAT
LOC_Os09g17360
Os.27215.1.A2_at--750--3071Chr09:10624103..10624127 (25 bp)
AATCATGATGCCAGTTGCCAGGCCA
LOC_Os09g17360
Os.27215.1.A2_at--78--891Chr09:10624084..10624108 (25 bp)
AGGCCATCTCGCGAGCGGATGAAGC
LOC_Os09g17360
Os.27215.1.A2_at--884--5371Chr09:10624064..10624088 (25 bp)
GAAGCGAGACCGTGACTGGACCTAC
LOC_Os09g17360
Os.27215.1.A2_at--958--8531Chr09:10624048..10624072 (25 bp)
TGGACCTACGGTATCGCGGCAGGAT
LOC_Os09g17360
Os.27215.1.A2_at--62--4031Chr09:10624003..10624027 (25 bp)
CGTCACGCCATTGTAATTTTCGCTG
LOC_Os09g17360
Os.27215.1.A2_at--548--511Chr09:10623971..10623995 (25 bp)
ATCGTTTTGATTTCGTACTCCGACA
LOC_Os09g17360
Os.27215.1.A2_at--463--9591Chr09:10623908..10623932 (25 bp)
TCTTGTTCTTGCTTTACAGTTGAAT
LOC_Os09g17360
Target Sequence 
AAAGTTCAAAATCGCGTGTTGCCGCACGACTTGCGCGAGACCGCTCAGTCTCGCGCGCGTCTCCTGTGTGCAAGACCGGA
CTTCGCTTCCCTAACCTTTGATTAATAAATTAATTAATTAGTGTCATTAGCATTTAATTAATTAATAGTAATATTTTTTA
ATAAACATCATTAGTAATTAATTAATCGGTAATTGTCTGTTAATTATCCACTAATCATGATGCCAGTTGCCAGGCCATCT
CGCGAGCGGATGAAGCGAGACCGTGACTGGACCTACGGTATCGCGGCAGGATTTGGCGAGACCGCGGCACGGCGTCACGC
CATTGTAATTTTCGCTGAATGGATATCGTTTTGATTTCGTACTCCGACAACGGTATATTTGTTATAAAAAATTTAGGGTA
ATTGTGTTCTTGTTCTTGCTTTACAGTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27215.1.A2_at     

Putative homologies in rice

Putative homologies in arabidopsis