Browse Element(s) Details


Os.26844.1.S1_at

Description gb:AK106363.1
DB_XREF= gi:32991572
TID=Os.26844.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-B03, full insert sequence.
FL= gb:AK106363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0979011/11Fe-S metabolism associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09760Os.10731.2.A1_at3/119+5280420..5287374retrotransposon protein, putative, unclassified
LOC_Os09g09760Os.47114.1.S1_x_at2/119+5280420..5287374retrotransposon protein, putative, unclassified
LOC_Os09g09760Os.46314.2.S1_x_at2/119+5280420..5287374retrotransposon protein, putative, unclassified
LOC_Os09g09770NANA9+5289339..5295740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09780NANA9+5298688..5301967retrotransposon protein, putative, unclassified
LOC_Os09g09790Os.26844.1.S1_at11/119+5306474..5308044Fe-S metabolism associated domain containing protein, expressed
LOC_Os09g09800NANA9+5312449..5315317retrotransposon protein, putative, unclassified
LOC_Os09g09810Os.27215.1.A1_at1/119+5315711..5320269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09820Os.54271.1.S1_at11/119+5319875..5322838expressed protein
LOC_Os09g09830Os.13980.1.S1_at11/119+5326518..5327817heavy metal-associated domain containing protein, expressed
LOC_Os09g09839NANA9+5331062..5331351NA

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26844.1.S1_at--623--6391Chr09:5306962..5306986 (25 bp)
GATCGAGGACATATCGCACCTCCAT
LOC_Os09g09790
Os.26844.1.S1_at--608--9351Chr09:5306949..5306973 (25 bp)
TCGCACCTCCATAAGGGTCATGCTG
LOC_Os09g09790
Os.26844.1.S1_at--257--1091Chr09:5306838..5306862 (25 bp)
AGGGCTGTGTATGATCTTCTGCAAG
LOC_Os09g09790
Os.26844.1.S1_at--1047--2731Chr09:5306805..5306829 (25 bp)
AAGAATGGGTTGCATGCGCTCTCCA
LOC_Os09g09790
Os.26844.1.S1_at--860--7151Chr09:5306757..5306781 (25 bp)
GTCTAGGTATCTGCACGACTGCATA
LOC_Os09g09790
Os.26844.1.S1_at--437--9851Chr09:5306732..5306756 (25 bp)
TACAGTTAACAGAGACGCCATAGAT
LOC_Os09g09790
Os.26844.1.S1_at--847--4431Chr09:5306716..5306740 (25 bp)
GCCATAGATGCATTTTTGGTCATGT
LOC_Os09g09790
Os.26844.1.S1_at--431--6451Chr09:5306645..5306669 (25 bp)
GATCAAAGCTTCTCAGTTCTGATAA
LOC_Os09g09790
Os.26844.1.S1_at--998--5211Chr09:5306565..5306589 (25 bp)
GAATTTTGTCATGCCAGAATAAGAA
LOC_Os09g09790
Os.26844.1.S1_at--57--6771Chr09:5306520..5306544 (25 bp)
GTTAATATGTATGGCTCACTGATCA
LOC_Os09g09790
Os.26844.1.S1_at--935--6451Chr09:5306500..5306524 (25 bp)
GATCAATCTTGCATGTTCTATTAGC
LOC_Os09g09790
Target Sequence 
GATCGAGGACATATCGCACCTCCATAAGGGTCATGCTGGNGTGTCNGGNAGCAATGGCGAGACNCATTTNAATGTTNGGG
TGGTNTCAGAGGCGTTTCAGGGGAAGAGCCTGCTCAAGAGGCACAGGGCTGTGTATGATCTTCTGCAAGANGAGCTCAAG
AATGGGTTGCATGCGCTCTCCATNGATGCAAAGACACCATCAGAAGTCTAGGTATCTGCACGACTGCATATACAGTTAAC
AGAGACGCCATAGATGCATTTTTGGTCATGTTATCTTTGTAAGGTTTAGTTTTGGATACATACTGTAGATTTTGAAAGAT
CAAAGCTTCTCAGTTCTGATAATTTTGTNTTTTTACTGCAATAATTAGTGCCTTAATATTATGGCAGAGATACACATGAA
TTTTGTCATGCCAGAATAAGAAGGAACGACTTGTTTTATTGAGTTAATATGTATGGCTCACTGATCAATCTTGCATGTTC
TATTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis