Browse Element(s) Details


OsAffx.29832.2.S1_at

Description tigr:9637.m01077
TID=OsAffx.29832.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1344011/11expressed protein
LOC_Os12g125601/11NADP-dependent oxidoreductase P2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13410Os.51183.1.S1_at11/119+7752372..7754377expressed protein
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein
LOC_Os09g13430NANA9+7769806..7772168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13440OsAffx.29832.2.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13440OsAffx.29832.2.S1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.2.A1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.1.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13450OsAffx.17685.1.S1_at11/119+7778360..7778914hypothetical protein
LOC_Os09g13460OsAffx.17686.1.S1_at10/119+7780270..7781314hypothetical protein
LOC_Os09g13470Os.53954.1.S1_at11/119+7796868..7799107expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29832.2.S1_at--714--3292Chr05:6698603..6698626 (24 bp)
CAAAGTAGCATCTCGGAGGCCGTGT
NONE
OsAffx.29832.2.S1_at--945--2311Chr09:7774838..7774862 (25 bp)
AAAGTAGCATCTCGGAGGCCGTGTC
LOC_Os09g13440
OsAffx.29832.2.S1_at--734--1171Chr09:7774836..7774860 (25 bp)
AGTAGCATCTCGGAGGCCGTGTCAG
LOC_Os09g13440
OsAffx.29832.2.S1_at--289--10011Chr09:7774834..7774858 (25 bp)
TAGCATCTCGGAGGCCGTGTCAGAA
LOC_Os09g13440
OsAffx.29832.2.S1_at--107--471Chr09:7774830..7774854 (25 bp)
ATCTCGGAGGCCGTGTCAGAATCAA
LOC_Os09g13440
OsAffx.29832.2.S1_at--954--9471Chr09:7774829..7774853 (25 bp)
TCTCGGAGGCCGTGTCAGAATCAAA
LOC_Os09g13440
OsAffx.29832.2.S1_at--145--3791Chr09:7774828..7774852 (25 bp)
CTCGGAGGCCGTGTCAGAATCAAAA
LOC_Os09g13440
OsAffx.29832.2.S1_at--723--9411Chr09:7774827..7774851 (25 bp)
TCGGAGGCCGTGTCAGAATCAAAAA
LOC_Os09g13440
OsAffx.29832.2.S1_at--70--8011Chr09:7774825..7774849 (25 bp)
GGAGGCCGTGTCAGAATCAAAAAAT
LOC_Os09g13440
OsAffx.29832.2.S1_at--956--8411Chr09:7774822..7774846 (25 bp)
GGCCGTGTCAGAATCAAAAAATGAT
LOC_Os09g13440
OsAffx.29832.2.S1_at--872--6134Chr12:6911100..6911524 (25 bp)
GAGGGAGTATATAATTTCTTCATTT
LOC_Os12g12560
Target Sequence 
CAAAGTAGCATCTCGGAGGCCGTGTCAGAATCAAAAAATGATTATATTTTGGGACGGAGGGAGTATATAATTTCTTCATT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29832.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis