Browse Element(s) Details


OsAffx.29832.2.S1_s_at

Description tigr:9637.m01077
TID=OsAffx.29832.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1344011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13410Os.51183.1.S1_at11/119+7752372..7754377expressed protein
LOC_Os09g13420OsAffx.6261.1.S1_x_at11/119+7758918..7761038hypothetical protein
LOC_Os09g13430NANA9+7769806..7772168retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13440OsAffx.29832.2.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13440OsAffx.29832.2.S1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.2.A1_at11/119+7772027..7776015expressed protein
LOC_Os09g13440Os.6976.1.S1_s_at11/119+7772027..7776015expressed protein
LOC_Os09g13450OsAffx.17685.1.S1_at11/119+7778360..7778914hypothetical protein
LOC_Os09g13460OsAffx.17686.1.S1_at10/119+7780270..7781314hypothetical protein
LOC_Os09g13470Os.53954.1.S1_at11/119+7796868..7799107expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29832.2.S1_s_at--63--9291Chr09:7775789..7775813 (25 bp)
TCCGGCAACGTCGTCCTTGTGGAAG
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--492--1891Chr09:7775782..7775806 (25 bp)
ACGTCGTCCTTGTGGAAGATCCGGA
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--442--5351Chr09:7775768..7775792 (25 bp)
GAAGATCCGGAGAGAACGCAACCCT
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--615--8971Chr09:7775569..7775593 (25 bp)
TGAAAAACAACAGCAAGCCCCTCGT
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--180--2651Chr09:7775555..7775579 (25 bp)
AAGCCCCTCGTCGTCAAGAGTAGTC
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--365--1631Chr09:7775515..7775539 (25 bp)
AGCGGCTGGATGTTGTTCTTGGCCA
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--938--1831Chr09:7775472..7775496 (25 bp)
ACGCTGGACGTTGGAGGAGATACAC
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--860--2191Chr09:7775451..7775475 (25 bp)
ACACAAGGGCGTATGCTACATCAAG
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--1--1351Chr09:7775428..7775452 (25 bp)
AGAGTGGGAGCTACTCCAACCACAT
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--230--9571Chr09:7775404..7775428 (25 bp)
TCTTCACTGGCGTCTCGACCAAGAG
LOC_Os09g13440
OsAffx.29832.2.S1_s_at--1013--1311Chr09:7775383..7775407 (25 bp)
AGAGGACCGTCCACCTGCAGGAGAA
LOC_Os09g13440
Target Sequence 
TCCGGCAACGTCGTCCTTGTGGAAGATCCGGAGAGAACGCAACCCTCCAGCAACTCCTATGGCCGACAGCTGATATGGTA
CAAGGTCGTCGACGAGGCCACCGGCGGCGGCGGCAGCACAACTAACCAGAACTTCGTCCTGAAAAACAACAGCAAGCCCC
TCGTCGTCAAGAGTAGTCGTGGCGACGGGCGGCAGCGGCTGGATGTTGTTCTTGGCCAGGGAAGAGATGTTGGAGAACGC
TGGACGTTGGAGGAGATACACAAGGGCGTATGCTACATCAAGAGTGGGAGCTACTCCAACCACATCTTCACTGGCGTCTC
GACCAAGAGGACCGTCCACCTGCAGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29832.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis